BAC Information

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BAC

Clone NameMSMg01-321L04
Chromosome7 (Build37)
Map Location 121,340,750 - 121,341,002
singlet/doubletsinglet
Overlap genenone
Upstream geneArntl, A630005I04Rik, Btbd10, Pth, LOC100042736, Mlstd2, EG434228, Spon1, Rras2
Downstream geneLOC668451, Copb1, Psma1, 4933406I18Rik, Pde3b, Cyp2r1, Calca, LOC100043295, Calcb, Insc, EG627967, LOC668472
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321L04.T7 (MSMg01no321_l04.b1)MSMg01-321L04.TJ (MSMg01no321_l04.g1)
ACCAG440599AG440600
length769762
length of high quality
(start - end)
254 (49 - 302)94 (80 - 173)
definitionCHROMAT_FILE: MSMg01no321_l04.b1 PHD_FILE: MSMg01no321_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:30 2005CHROMAT_FILE: MSMg01no321_l04.g1 PHD_FILE: MSMg01no321_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCGAGAATGCGCG
GAATTCCAACTTAATATCCTGGAACTAGGCTTGGGGCATGGCTACATGGT
AGAGCACTCTCCTTACATGTACGAGACCCTTTGGGTTCTGTCTTGACAAA
GTAAAAGAAAAGGGGGAAAAAAGGAATTTCTACCACCCTGAGCTCATCAG
TGACTGTAGAACTGTCTGGTCCCATCCTACCCACTGACTATAGGTATAAG
AAAAAAAAAAGCTTTATAAACTGTGTATGGTCGTTCTTGGCTGTAATCCT
GGCTCTCAGGAGGATGAAGCAGTATGATCAGGCATTTTAGGGCTTCTCTG
GTTATACAGTGAGTTATAAGCTAGCCTGCCATCCATGAAATCTTGTTTCA
TAATTAAGAAAAGAAGTTAACACCCCCCTTTTTGTGCCATTATCACTGAA
ATTTCCAGGTTCTTTTTATTCTAACACAGCTTTATACTTTATTTAGCTAG
GTTTTGGGTTTACTTTTTCTTTCTTTCTTTCTGTTTTGTAATTTGCGGCT
TTTTTGGTATTCACGTTCTTATGCCCATTTATTTTTCTGTGTTTTTATTC
TGTATTACCCTGGAATATCATTTTAGCCACTTTTTGTTTTTTTTTCTTAT
TTGCTCGTATGGCGCACCTATTTTCCGTGACCGCCTAATTCCCTTGTCTG
CCTCTACGCCTTTTTCATATGTATTTATGCCTCTCTTCGCACTGCGCATT
CTTTTTATTAGTTTATTTT
ACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTTCCGAATTCCAAACCAACTGGATTCTTCCCTCA
TGCTACTTTTATGTCACCTATACCACACCACCTGTTAAAACATTAGGGGG
AAAGGATTTATTGGCCGTTAGAGGATTTAGCCAGTGGTTGCTTGACCCAT
GTTCTTCATAGAACATCATGGTGTGGAAGAGTAATGCACTTTCCCAAGAT
AGGCCTGCTTCCCAAAGTCTCCACTACCCCTGCCCCCTTCCCCAAAAGAC
CACTGCTCTGACTGGTGTCTGGACTATGCTAACTTTACTCTTAATCCAGA
GAGTGTTAGGTAAGATTGCTCACTCAGGCACACCGGAAGAGTATTTGGTT
TTTACTCTAAAGCATGTGGTGTCCCCCCCCCCCTATGCATTGGTTGGGGT
CTGACCTCATAATCCTATTTATTCGGTCTGTCTGAAAAGCATTGTTGTAC
ATGATCTGTTATGAAGGATATTAGTGTCCCCGTCTCCATTTCATCAGCGT
TCTAGACGTATGCCCTTGTATGTTAACTCGTGCTTGCTTATTATGATGCT
ATTGTAGTACTGTGTATAAGTCACTTGTCTTCATCCGATGCTCTCTTTCT
TGTTTTCTATATCTTAGTAATCTTTCTGGCCTGTTGGTTATATCGTGAAA
ATTTTCTGTCTCCATTTCTTCCATCTTTGAGATGTTTATGGCTTCCCCTC
CCTTACCTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_l04.b1 MSMg01no321_l04.b1 CHROMAT_FILE:
MSMg01no321_l04.b1 PHD_FILE: MSMg01no321_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:30 2005
         (254 letters)



>mm_chr7_121340549_121341202
          Length = 654

 Score =  455 bits (235), Expect = e-132
 Identities = 249/255 (97%), Gaps = 4/255 (1%)
 Strand = Plus / Minus

                                                                       
Query: 2   ggaattccaactta--atatcctggaactaggcttggggcatggctacatggtagagcac 59
           ||||||||||||||  ||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ggaattccaacttaagatat--tggaactaggcttggggcatggctacatggtagagcac 397

                                                                       
Query: 60  tctccttacatgtacgagaccctttgggttctgtcttgacaaagtaaaagaaaaggggga 119
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 396 tctccttacatgtacgagaccctttgggttctgtcttggcaaagtaaaagaaaaggggga 337

                                                                       
Query: 120 aaaaaggaatttctaccaccctgagctcatcagtgactgtagaactgtctggtcccatcc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 aaaaaggaatttctaccaccctgagctcatcagtgactgtagaactgtctggtcccatcc 277

                                                                       
Query: 180 tacccactgactataggtataagaaaaaaaaaagctttataaactgtgtatggtcgttct 239
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tacccactgactatagatataagaaaaaaaaaagctttataaactgtgtatggtcgttct 217

                          
Query: 240 tggctgtaatcctgg 254
           |||||||||||||||
Sbjct: 216 tggctgtaatcctgg 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 654
Length adjustment: 9
Effective length of query: 245
Effective length of database: 645
Effective search space:   158025
Effective search space used:   158025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)