BAC Information

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BAC

Clone NameMSMg01-322I04
Chromosome7 (Build37)
Map Location 127,236,128 - 127,236,442
singlet/doubletsinglet
Overlap geneDnahc3
Upstream geneGpr139, LOC100042871, Gp2, Umod, 1700007B13Rik, C730027J19Rik, Acsm2, Acsm1, BC048390, Thumpd1, EG434233, Acsm3, Exod1, 2610020H08Rik, Dcun1d3, LOC100043399, LOC100043396, Lyrm1
Downstream geneTmem159, Zp2, Anks4b, Crym, Abca14, Abca15, Abca16, LOC668429, LOC546994, LOC100042914, E130201H02Rik, LOC637957, Uqcrc2, 4930408O21Rik, BC030336, E030013G06Rik, EG436008, LOC100043426, Eef2k, Polr3e, Cdr2, 4933427G17Rik, EG668548, Mettl9, LOC668456, Igsf6, Otoa
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322I04.T7 (MSMg01no322_i04.b1)MSMg01-322I04.TJ (MSMg01no322_i04.g1)
ACCAG441188AG441189
length735821
length of high quality
(start - end)
319 (45 - 363)161 (77 - 237)
definitionCHROMAT_FILE: MSMg01no322_i04.b1 PHD_FILE: MSMg01no322_i04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:29 2005CHROMAT_FILE: MSMg01no322_i04.g1 PHD_FILE: MSMg01no322_i04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTCTTCTATGACTGAAATCTATGCCACCTCTGCATCAGTGAGGGG
AACGAAACAGGAAAAAAAAATCCCCAAACCAACTAGAAATGATCATCCAC
ATCCAGTACAATACCATCCAAACAAGAGTCTGGCAAGGGTGCTTCCAGGA
ATACGAAGATATTGTTTCTTTTAAGGTCTCAGAGGTAAAGTATGTATCGA
TGAACACGTTAGGGCTGTCTGCACTGTGTCTTTGCATGCAAGAAGAATTT
GTGGCCAGTGGAAAACTCTCCTCTGGCTTAGACTTTAAAATCTGTTTCAA
ATAAAAACTTCATTTTTTTAGCACCCCCCCCCCACCCGAGCAGATCATGT
TGAGTAAGTTACAACAAGACCCCCCATGAACAATTAACCCCCCCCACCAC
CAGAAGCCCTGACCTTGTGGAGCCAGAGAGGATCGTAATATTAACTGGAA
AGGGGCTCCGTGGTTGTGCTTTTGTTCACTATGGGACAAACCGGATTTTG
GTGCCGAGAGCACCTGGGAAGTTAATCCTCCCACTAGAAGAAAGCAGAAT
ACAGTCCTGCTGGGAAAATCTGCTCTACCCCAGTTTCAATCTATGTGGCA
GCATGTGGCTGATCCTAGCCTCTGGCTCTGAGCGCGGAACCTATCAGAAG
GCTCTATGTTCCTATCTATGGTGATCAGCTAGACG
NCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTAACTGAGGAAACCAGAAGGGCT
GTGAAGCACCTAAAGAAATGTTCCTCGAAAAAAAAAAACCAAAATAAATA
AATAAATAAATAAATAAATAAATAAATAAATAAATAAGGAAAGAAGGAAG
GAAGGAAGGAAGGAAGGAAGGAAGGGAGGGAGGGAGGAAGTTTGACTGCT
TCTCCTATGTATAATTTATTTTTTCCAGCATTCCTATTGTTAGCTTACTA
ACCGCCCCTATATACTGCTACAGTTTTTTTTTTCCCCTTCAAATAGACTT
ACATGTATGAAAAATTTTTTTTTTTTTCCCCCCCCCCCCCCCCATTATGT
TTTTTTTTTTGTATATTTTGTTTTTTCCCCCCCCCCCCAAAAAAAAAAAA
AAAAAATTTTGGGGGGGGGGGGGGGATCAAATTTATCATCCTTCTACTTT
TCCTTTCTTTATATTTTACATAATCCCCTTTTAATCCATTTGTTTCTACT
TACTTATTTTTTATTTTTTAAGTATAGATCATATTTTCCTTTTTTGGTTT
AATCTTCTCTTTTCTTCTGTTATTTCTTTCCATTCTTTTTCATTCACCTT
TTTCTCTTCTTTTTTTCTTATTTGTATCCTTTTTTTTATTTATTCTTCTT
GTTAAACCCTCATTATTCTACTTCACCGTTTTTTTTTGTTACTCATTTTA
ATTTATCATCTCTTTTTATCCCAATTTTTTCATCTATTTTTTGTTTGTTG
CCCATTTCTTTTTTTTTCTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_i04.b1 MSMg01no322_i04.b1 CHROMAT_FILE:
MSMg01no322_i04.b1 PHD_FILE: MSMg01no322_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:29 2005
         (319 letters)



>mm_chr7_127235924_127236642
          Length = 719

 Score =  571 bits (295), Expect = e-167
 Identities = 310/315 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctcttctatgactgaaatctatgccacctctgcatcagtgaggggaacgaaac 64
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 205 gaattctctcttctatgactgaaatctatgccacctctgcatcaatgaggggaacgaaac 264

                                                                       
Query: 65  aggaaaaaaaaatccccaaaccaactagaaatgatcatccacatccagtacaataccatc 124
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aggaaaaaaaaatccccaaaacaactagaaatgatcatccacatccagtacaataccatc 324

                                                                       
Query: 125 caaacaagagtctggcaagggtgcttccaggaatacgaagatattgtttcttttaaggtc 184
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 325 caaacaagagtctggcaagggtgcttccaggaatatgaagatattgtttctttcaaggtc 384

                                                                       
Query: 185 tcagaggtaaagtatgtatcgatgaacacgttagggctgtctgcactgtgtctttgcatg 244
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 385 tcagaggtaaagtatgtatcgatgaacatgttagggctgtctgcactgtgtctttgcatg 444

                                                                       
Query: 245 caagaagaatttgtggccagtggaaaactctcctctggcttagactttaaaatctgtttc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caagaagaatttgtggccagtggaaaactctcctctggcttagactttaaaatctgtttc 504

                          
Query: 305 aaataaaaacttcat 319
           |||||||||||||||
Sbjct: 505 aaataaaaacttcat 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)