Query= MSMg01no323_e15.b1 MSMg01no323_e15.b1 CHROMAT_FILE:
MSMg01no323_e15.b1 PHD_FILE: MSMg01no323_e15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:40 2005
(637 letters)
>mm_chr7_67931182_67932220
Length = 1039
Score = 855 bits (442), Expect = 0.0
Identities = 567/616 (92%), Gaps = 19/616 (3%)
Strand = Plus / Minus
Query: 11 tgctaaatctctccacttatagatccttttccccaccttttt---acactttgcaaacct 67
|||||||| |||||| || | |||||| |||||| ||||||| ||| ||| |||
Sbjct: 612 tgctaaatgtctccatttcttgatcctcttcccc-ccttttttgaaca--ttgaaaa--- 559
Query: 68 taa-----taatttttacgaaacatgcataaatacaccatgaaattagattcttatcatt 122
|| ||||||||| ||||||||||| |||||| ||||||||||||||||||| |||
Sbjct: 558 -aaatgattaatttttaggaaacatgcatgaatacaacatgaaattagattcttattatt 500
Query: 123 ta-ctcactgtgatgccgtacaaaatattgtgtaaaagctaagtttaatccgtatttcat 181
|| | ||| ||||||||||||||||||||||||||||||||| ||| |||| ||||||||
Sbjct: 499 tatc-cacagtgatgccgtacaaaatattgtgtaaaagctaatttttatccatatttcat 441
Query: 182 aaagaaacctattccaggcagtccagtgactaagtaaggtaagacagtgacaaggacata 241
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gaagaaaactattccaggcagtccagtgactaagtaaggtaagacagtgacaaggacata 381
Query: 242 gctagtttggtctaccatttaactcaagcacaacctgggaatcagcacaagttcagggag 301
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 380 gctagttaggtctaccatttaactcaagcacaatctgggaatcagcacaagttcagggag 321
Query: 302 agcctttaaaatatgataaaaactttgat--ttttttcttgatttctttcttttttattt 359
|||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 320 agccttaaaaatatgataaaaactttgattgttttttcttgatttctttcttttatattt 261
Query: 360 attctctttgcactcccattactgcttctcttccataatcactcctccatgccccctccc 419
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 attgtctttgcactcccattactgcttctcttccataatcactcctccatgccccctccc 201
Query: 420 tttcttttttaagagggtggagtccttcacttggtttccacccacctcagcacatcaagt 479
||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 200 tttctcttttaagagggtggagtccttcacttggtatccatccacctcagcacatcaagt 141
Query: 480 ctatgccagtctaggcacatctactctgccttaggccagacaagataacccagatagtag 539
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 140 ctatgccagtctaggcacatctactctgccttaggccagacaagataacccacatagtag 81
Query: 540 aacatatcccccacaggaaacagcttttgggatagtcacaagttcagttgttcaggaccc 599
|||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||
Sbjct: 80 aacatatcccccacaggaaacagcttttgggataaccaccagtccagttgttcaggaccc 21
Query: 600 acatgacaacatatct 615
|||||||||| |||||
Sbjct: 20 acatgacaacctatct 5
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1039
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1029
Effective search space: 645183
Effective search space used: 645183
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no323_e15.g1 MSMg01no323_e15.g1 CHROMAT_FILE:
MSMg01no323_e15.g1 PHD_FILE: MSMg01no323_e15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:40 2005
(466 letters)
>mm_chr7_67636870_67637735
Length = 866
Score = 692 bits (358), Expect = 0.0
Identities = 443/480 (92%), Gaps = 17/480 (3%)
Strand = Plus / Plus
Query: 1 gaatccggaatcacacagtgcccctgtgacaacaggaagttaagtcagtctgacagtcca 60
||||||||||||||||||||| |||| |||||||||||||||| |||| |||||||||||
Sbjct: 201 gaatccggaatcacacagtgctcctgcgacaacaggaagttaactcagcctgacagtcca 260
Query: 61 tctctgtttgtggctcggagaaatcctcaaagaagagaatctttggtcccccggg---ct 117
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 tctctgtttgtggctcagagaaatcctcaaagaagagaatctttggtcccccgggtttct 320
Query: 118 tctttttttttttttttttttttttttaagtttttattggtttatttacatttcaaatgt 177
| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 ttttttttttttttttttttttttttttagtttttattggtttatttacatttcaaatgt 380
Query: 178 tgtccctctcctaggtttcctctccgcaaacctccctttccccctgcatctcagtcccct 237
| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatcccccttctaggtttcctctccgcaaacctccctttccccctgcatctcagtcccct 440
Query: 238 ctgcatctatgaagttgctctcccacggacccacttattctcctgcttcatcccgagcct 297
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 441 ctgcatctatgaagttgctctcccacggacccaccgactctcctgcttcatcccgagcct 500
Query: 298 ttccctatgctgcattatcaagcctgtctttcctccgcaggctcctcacagccactgcgc 357
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttccctacgctgcgttatcaagcctgtctttcctccgcaggctcctcacagccactgcgc 560
Query: 358 agttttgtgacgcatttcctgctgtggccggtcttgcggagaggagactaaagcggcgac 417
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 561 aggtttgtgacgcatttcctgctgtggctggtcttgcggagaggagactaaagcggcgac 620
Query: 418 agcgac--cg----------cagcgactgcggcggcggcggtggaaggggggtgggggtg 465
|||||| || ||||| | ||||||||||||| || ||||||||||||||
Sbjct: 621 agcgacagcggcggcggcggcagcggcggcggcggcggcgg--gagggggggtgggggtg 678
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space: 390336
Effective search space used: 390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
