BAC Information

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BAC

Clone NameMSMg01-324I07
Chromosome7 (Build37)
Map Location 108,140,568 - 108,140,965
singlet/doubletsinglet
Overlap genenone
Upstream geneChrdl2, Pold3, 2610209A20Rik, Kcne3, LOC631577, Pgm2l1, Gpx2-ps1, P4ha3, Ppme1, AU020772, Ucp3, Ucp2, Dnajb13, LOC667112, Chchd8, Mrpl48, LOC100041155, Rab6, LOC100041167, Plekhb1, B930006L02Rik, LOC100041204, Tnfrsf19l, Arhgef17, P2ry6
Downstream geneP2ry2, LOC100049539, EG435996, Fchsd2, EG622673, Atg16l2, Stard10, Centd2, Pde2a, Art2a, EG630138, Art2b, Clpb, Phox2a, Inppl1, Folr2, Folr1, 3200002M19Rik, F930017I19Rik, 2400001E08Rik, Lrrc51, LOC667222, Numa1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-324I07.T7 (MSMg01no324_i07.b1)MSMg01-324I07.TJ (MSMg01no324_i07.g1)
ACCAG442646AG442647
length833713
length of high quality
(start - end)
219 (51 - 269)402 (82 - 483)
definitionCHROMAT_FILE: MSMg01no324_i07.b1 PHD_FILE: MSMg01no324_i07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:51 2005CHROMAT_FILE: MSMg01no324_i07.g1 PHD_FILE: MSMg01no324_i07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCAGCCTGTCCAACTCTCCAACAGGACTGACTGCTGGAGAG
GTTCTTAGCATCCCGTTTGGAAAGGTCCCAGTTTTACTTGGGAGGCAGAC
AGAGGCAGGTGGATTTCTGTTAGTTTGAGGTTAGCCTGGTCTACAGAGTT
CCAGGATGGTCAAGGCTAGAGAGAAACTGTCTCTCCATAAAAAGAAAATG
AAAGGCAGGGGGAGGGAGGGAGGTATGTCATCCTTATCTCTCTTTTCTTC
TTTCCCCCTTTTCTTTCCTCCTTTTTTTTTTCTCCTTTGTTATCTTCCAC
CTTTCTCTTTGCTACTCCTCGTGCCCCTCCCCTTTATTTTTAATTTCACT
TATCCCTTTCTTTTAGTCTTCTCTTTTCCCCCCCCCAACAGCTTTCCTCC
TCTGTTTTGCCCTTCTTATCTTCCTTTATCCTTCTCCGTTTCTCTCTCAT
TCTTGCCGCATCTTCCTCCTTTTCCTTCTCTTTTTTCTCCTCTCCTTTTT
TTTCTCCCTCTCCTCGCGCGTTCCTCTTTTTATCTCACTTCTGTACTTAT
CCCTCTCTCCGTTACTTTCCCTCGTCTTTTTCATCCCGCGCGAGTTTTTC
TCTCACACCAAAAAACTCACTGCTGCGCGATTTTTTCTATACTTCCTTTA
TTCTTATTTTTACACTTACTCATTCCCCACCGTTTTTGCGATCACACACC
GCCCCGTGTCGCCTGTATGTGATTGCAAAGCTTATCTACTACGGGGATTA
CTCTTCATTCTATTATTTATCGTTGTTATTGTT
NNNAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGCTCCGACTTCCTGAGT
GCTGGGATTACAGGCGTACATTAAGTCCCAGTAGGAAGGGTTTACTCTGA
CTCACAGTAGAAGGGTTTCCAGTTCATGATTGGTTTATTCTGTGGCTTGA
GGTCACCAGAGAAACCTAAGTTTGATGACAAACCAACTTCAGTATGTTGT
CCTCGGAACTCCACATGTGCTCCCCACAACACAAATAAATGTGATTCTAA
GAAATGTTCAAAGGAAGCCCTCCCCCAACTTCTGCCCAGAAAGCTCTCTC
ATCTCTTTGTACCATGTGAGGGCTCAACAGGAAGTTCATGTGTTGTAACT
GGGAAGAACCCAGCCATGTGACCCCACACCACCAAACTCTGACTTGTGAA
ACATCACTGTCCACCATGGAAAAGCCATGACAGTATCAAGGTGTTTGGAG
AGAGGGCTCAGCTGTTAAAAACACTTGCTACTCGCCAGGAAGTGGTGGCG
CATGCCTTTAATCCCAGCACTTGGCAGGCATCAGATTTTCTGAGTTCAAG
GACAGCCTGGTCTACAGAGTGAGTTTCAGGACTTCCAGGGCTACCCAGAT
TATCCCTGTCTCATACTAACAAACTAACTAATCTATTTAATATCACCTTG
CTTCTCTTGTAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no324_i07.g1 MSMg01no324_i07.g1 CHROMAT_FILE:
MSMg01no324_i07.g1 PHD_FILE: MSMg01no324_i07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:51 2005
         (402 letters)



>mm_chr7_108140330_108141131
          Length = 802

 Score =  754 bits (390), Expect = 0.0
 Identities = 396/398 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   tccgacttcctgagtgctgggattacaggcgtacattaagtcccagtaggaagggtttac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 tccgacttcctgagtgctgggattacaggcgtacattaagtcccagtaggaagggtttac 577

                                                                       
Query: 65  tctgactcacagtagaagggtttccagttcatgattggtttattctgtggcttgaggtca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 tctgactcacagtagaagggtttccagttcatgattggtttattctgtggcttgaggtca 517

                                                                       
Query: 125 ccagagaaacctaagtttgatgacaaaccaacttcagtatgttgtcctcggaactccaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 ccagagaaacctaagtttgatgacaaaccaacttcagtatgttgtcctcggaactccaca 457

                                                                       
Query: 185 tgtgctccccacaacacaaataaatgtgattctaagaaatgttcaaaggaagccctcccc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 456 tgtgctccccacaacacaaataaatgtgattctaagaaatgttcaaaggaagccctccct 397

                                                                       
Query: 245 caacttctgcccagaaagctctctcatctctttgtaccatgtgagggctcaacaggaagt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 caacttctgcccagaaagctctctcatctctttgtaccatgtgagggctcaacaggaagt 337

                                                                       
Query: 305 tcatgtgttgtaactgggaagaacccagccatgtgaccccacaccaccaaactctgactt 364
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 336 tcatgtgttgtaactgggaagaacccagccatgtgacctcacaccaccaaactctgactt 277

                                                 
Query: 365 gtgaaacatcactgtccaccatggaaaagccatgacag 402
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 276 gtgaaacatcactgtccaccatggaaaagccatgacag 239


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space:   311649
Effective search space used:   311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)