Query= MSMg01no325_h04.b1 MSMg01no325_h04.b1 CHROMAT_FILE:
MSMg01no325_h04.b1 PHD_FILE: MSMg01no325_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:57 2005
(686 letters)
>mm_chr7_49865385_49866470
Length = 1086
Score = 1002 bits (518), Expect = 0.0
Identities = 644/692 (93%), Gaps = 22/692 (3%)
Strand = Plus / Plus
Query: 5 gaattctatcttggctcttcagaacttttcggctaatatccacttaccagtgag-cgcat 63
|||||||||||||| | |||||||||||||||||||||| |||||| ||||||| | |||
Sbjct: 205 gaattctatcttgggtattcagaacttttcggctaatattcacttatcagtgagtc-cat 263
Query: 64 tccatgtatcttcttttctgattgggttgcctcactcaggataacactttctagttttat 123
|||||||||||||||||||||||||||| ||||||||||||||| | |||||| ||||||
Sbjct: 264 tccatgtatcttcttttctgattgggttacctcactcaggataatagtttctacttttat 323
Query: 124 ccatttgccaaagaatctgattaatttattgtttttaatagttgagtagtactccattgt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ccatttgccaaagaatctgattaatttattgtttttaatagttgagtagtactccattgt 383
Query: 184 gtaaatga-gccacattttctacatccatttctttgttgaaggacatcttggttctttcc 242
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtaaat-atgccacattttctacatccatttctttgttgaaggacatcttggttctttcc 442
Query: 243 agcaccatcaaagca--atgtacttccagaaaa-aattgtaaagaaaagcaatgttggat 299
|||||||||||| | |||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 443 agcaccatcaaa--atgatgtacttccagaaaacaata-taaagaaaagcaatgttggat 499
Query: 300 atcatcaattaggagcatggattctatacaatccaaataaa-----ttttggggggggga 354
||||||||| ||||| ||||||||||||| ||||||| ||| ||| |||| ||||
Sbjct: 500 atcatcaatgaggagaatggattctatacgatccaaagaaaaaaaattt--ggggaggga 557
Query: 355 tttcgagacagggctcctaaataaacattttgcaaggaagcagagtttgccacattgctt 414
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 558 tttcgagacagggctcctaaataaacattttgcaaggaagcagagtttgccacgttgctc 617
Query: 415 gcattcacaggccttgtcttcagtataaatagtcatggcgatgatgacagaaatgggcaa 474
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 618 gcattcacaggccttgtcttcagtataaatagtcatg---atgatgacagaaatgtgcaa 674
Query: 475 aggcttaacaatattaaatatattcataaggtttctcgccagtatgat-ttgttttctgc 533
|||||| ||||||||||||||| ||||||||||||| ||||||||| | |||||||||||
Sbjct: 675 aggcttcacaatattaaatatactcataaggtttcttgccagtatg-tgttgttttctgc 733
Query: 534 atttggtgagaactgtgatgtgtaagcaaagggtgtaccacattgcttgcattcacagag 593
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 734 atttggtgagaactgtgatgtgtaagcaaagggtttaccacattgtttgcattcacagag 793
Query: 594 atacactcctctatgaatactgtcaagatcatgaaggctatagaaatttccaaaggcttt 653
|| |||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||
Sbjct: 794 attcactcctctatgaatactttcacgatcatgaaggctacagaaatttccaaaggcttt 853
Query: 654 acaatttaaaatacattcataaggtttctctc 685
||||||||||||||||||||||||||||||||
Sbjct: 854 acaatttaaaatacattcataaggtttctctc 885
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space: 727376
Effective search space used: 727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no325_h04.g1 MSMg01no325_h04.g1 CHROMAT_FILE:
MSMg01no325_h04.g1 PHD_FILE: MSMg01no325_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:57 2005
(657 letters)
>mm_chr7_50239875_50240931
Length = 1057
Score = 951 bits (492), Expect = 0.0
Identities = 519/528 (98%)
Strand = Plus / Minus
Query: 1 ttttgtgtaattaatgaaaagtgtgaaatctaaagggattattagcttgtcattaagtcc 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 ttttgagtaattaatgaaaagtgtgaaatctaaagggattattagcttgtcattaagtcc 473
Query: 61 ttaatgcttttgtccatatgaatttgcaggtgagtttaaaataaaatggaacattgtgct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ttaatgcttttgtccatatgaatttgcaggtgagtttaaaataaaatggaacattgtgct 413
Query: 121 tgaatagatggttgacacttgtctatttctctccagcacaatcttgtgtagctgaccata 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 412 tgaatagatggttgacacttgtctatttctctccagcataatcttgtgtagctgaccata 353
Query: 181 atgatctaaccaaatcatttatagttagattcccttacttatgaattctttcaagtcgtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 352 atgatctaaccaaatcatttatagttagattcccttacttatgaattctttcaagtcatc 293
Query: 241 aaacatacataggttttctctccagcatgtgttcttttatatattcaaagactattgctg 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 292 aaacatacataggttttctcaccagcatgtgttcttttatatattcaaagactattgctg 233
Query: 301 ttacacacaaatgttttattacattgattacattttttaaagacccattttatttatcat 360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 232 ttacacacaaatgttttattacattgattacattttttaaagatttattttatttatcat 173
Query: 361 atgtagatacactgtagctgtattcagacaccggaaacggtaatctggtcttgctacaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 atgtagatacactgtagctgtattcagacaccggaaacggtaatctggtcttgctacaga 113
Query: 421 tggttgtgagccaccatgtgcttgctgggatttgaactcaggacctctagaagaacagtc 480
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 112 tggttgtgagccaccatgtgcttgctgggatttgaactcaggacttctagaagaacagtc 53
Query: 481 agtgttctcaactgctaagccatatctccagcccccattgattacata 528
||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 52 agtgttctcaactgctaagccatctctccagcccccattgattacata 5
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space: 677409
Effective search space used: 677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
