Query= MSMg01no325_l13.b1 MSMg01no325_l13.b1 CHROMAT_FILE:
MSMg01no325_l13.b1 PHD_FILE: MSMg01no325_l13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:17 2005
(565 letters)
>mm_chr7_53380864_53381828
Length = 965
Score = 893 bits (462), Expect = 0.0
Identities = 520/550 (94%), Gaps = 20/550 (3%)
Strand = Plus / Plus
Query: 5 gaattctcagaaggcgaaggttgtgctgtctctttgtcaacaatccatttgttttagaac 64
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 205 gaattctcagaaggagaaggttgtgctgtctctttgtcaacaatccatttcttttagaac 264
Query: 65 tcttagactttcactgagcatatttaacacacccgagttttctgtggagcacgagagatg 124
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 265 tcttagactttcattgagcatatttaacacacccgagttttctgtggagcacaagagatg 324
Query: 125 cccaccccctctccttagagacctttgttttttcccctgagatccctggaacctctcaac 184
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cccacctcctctccttagagacctttgttttttcccctgagatccctggaacctctcaac 384
Query: 185 aaacatttttctaattatttgtttccgactacattttttttttctttttagtttcaaggt 244
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 385 aaacatttttctaattatttgtttccgactacattttttttt-ctttttagtttcaaggt 443
Query: 245 ggggattctcgtgtgccaggctggccttgaacttctgatccttgtgcattcacctcctaa 304
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 444 ggggattctcgtgtgccaggctggccttgaacttctgatcctcgtgcactcacctcctaa 503
Query: 305 gcgctgggattacaggcgtgcgctggcagccctggctcctgacattaatcttggaggttt 364
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 504 gcgctgggattacaggtgtgcgctggcagccctggctcctgacattaatcttggtggttt 563
Query: 365 tcagtttattcactaggttactcagccagcactgctactaagttccagaacatggtcacc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tcagtttattcactaggttactcagccagcactgctactaagttccagaacatggtcacc 623
Query: 425 tccaaacaaaccttgtgtaacaagtagtcactctctctc---------------cagcct 469
||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 624 tccaaacaaaccttgtgtaacaagtagtcactctctctctctcctgtctctctccagcct 683
Query: 470 ctggcaacaactcagctactttttaactctattcaacatgataggtttttgtttttgttt 529
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 684 ctggcaacaactcagctactttttaactctattcaacatgacaggttttt--ttttgttt 741
Query: 530 --ttgttttt 537
||||||||
Sbjct: 742 gtttgttttt 751
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space: 530025
Effective search space used: 530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no325_l13.g1 MSMg01no325_l13.g1 CHROMAT_FILE:
MSMg01no325_l13.g1 PHD_FILE: MSMg01no325_l13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:17 2005
(537 letters)
>mm_chr7_53536113_53537049
Length = 937
Score = 688 bits (356), Expect = 0.0
Identities = 410/448 (91%), Gaps = 32/448 (7%)
Strand = Plus / Minus
Query: 1 agcactgatgtggcccaagggcagagcccctgaggctctacctgggaggaaattggctta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 agcactgatgtggcccaagggcagagcccctgaggctctacctgggaggaaattggctta 390
Query: 61 cctttgttgaagaagtcacagtcatatgctaaagaagaaagaagggagatttcccatgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 cctttgttgaagaagtcacagtcatatgctaaagaagaaagaagggagatttcccatgag 330
Query: 121 tagggcactcacacccaacctctgcccttaatcaagaactgggtctggcccatttccaaa 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 329 tagggcactcacacccaacctctgcccttaatcaaaaactgggtctggcccatttccaaa 270
Query: 181 actctaagactgagggatggccttggaaaacttgtctcttttgtttcaggggaggggttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 269 actctaagactgagggatggccttggaaaacttgtctcttttgtttcaggggaggagttg 210
Query: 241 tttgttttgttttgtttt-------------------------------ttgagacaagg 269
|||||||||||||||||| |||||||| ||
Sbjct: 209 tttgttttgttttgttttgttttgttttgttttgttttgttttgttttgttgagacaggg 150
Query: 270 tttctctgtgtagtcctgactgtactggaactcactctgtagac-aggctggtctggaac 328
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 149 tttctctgtgtagtcccgactgtactggaactcactctgtagaccaggctggtctggaac 90
Query: 329 tcagagttctacctgcctctgcctccacagggctgggattaaaggcgtgcaccaccattg 388
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 89 tcagagttctacctgcctctgcctccccagggctgggattaaaggcgtgcaccaccactg 30
Query: 389 cccagacatccatatgccttaaggggag 416
||||||||||||||||||||||||||||
Sbjct: 29 cccagacatccatatgccttaaggggag 2
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space: 488529
Effective search space used: 488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
