BAC Information

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BAC

Clone NameMSMg01-325N08
Chromosome7 (Build37)
Map Location 114,022,586 - 114,023,264
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042856, LOC100042047, EG668108, EG668117, Gvin1, LOC672660, LOC100042097, LOC668128, LOC634394, EG209380, EG668139, Gm1966, LOC100042141, Olfr693, Olfr694, Olfr695, Olfr696-ps1, Olfr697, Olfr698, Olfr699, Olfr700, Olfr701, Olfr702, Olfr703, Olfr704, Olfr705
Downstream geneOlfr706, Olfr707, Olfr708, Olfr709-ps1, Olfr710, LOC384651, Olfr6, Olfr711, GA_x5J8B7W6B6J-1784824-1783474, Olfr2, Olfr713, Olfr714, Olfr17, Olfr715, Olfr716, Nlrp14, LOC100042278, 1700012H05Rik, Syt9, Olfml1, Ppfibp2, 5330417H12Rik, Cyb5r2, Ovch2, LOC100042310, Olfr467, Olfr468-ps1, Olfr469, GA_x5J8B7W6B6J-2580381-2580079, Olfr470, Olfr471, LOC626661
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-325N08.T7 (MSMg01no325_n08.b1)MSMg01-325N08.TJ (MSMg01no325_n08.g1)
ACCAG443616AG443617
length728730
length of high quality
(start - end)		683 (46 - 728)654 (77 - 730)
definitionCHROMAT_FILE: MSMg01no325_n08.b1 PHD_FILE: MSMg01no325_n08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:25 2005CHROMAT_FILE: MSMg01no325_n08.g1 PHD_FILE: MSMg01no325_n08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGGGGTAATGGCACTAAGAATACTATACATTTATGCATGAATTTA
TCAAAATAACAAAATTAGTAAGAGAAAAAAAGAAAACAGATTGAGTTAAT
GTGAATAGATAATTAGTGGAGAATAAAGTAGATGAAATTCATTTTGTGAT
GTTTCTTTTACTAACTTAGAGGTTGAAATACTGTGCCAATGACTGAAAGG
GACGAGGTTGTAAGTTTTGATGCTGGGGCAAATCAGAATCCATATAGATT
TTTATAATTATAATCAAAGGCAATGGAGAAAAGTTTCAGGCAAAAATTAT
TGTAAAGGAGCAAAATTTTTAGGAAGTCAATGAAATTTAAATCCTAGAAA
AGGTTAGCCATTGATAGATAGCTGTAAATGAAGAAAACCTATGTATGCTA
TTCGAATACAGGTGCAGGTGAGTAGGAGACTCAGAGAGAAAAAGAGCAGG
TCTAAATGAAGTATGGAGCGAGTTTGTCAGATTAAACCCAATTCATTCAT
AGCAATTTTTTGGAAATAAATGTGTAAATTATTCATAAATGGAAACCTAA
GTGGGCCTGAGAACTATAACAATATAGTTTTTCTAGGCAGGAGAGGATGT
AGAAAAGTTGTGAGAGACAGGTGGTAGGAGACTCCAAAGAGTACAACAGG
ATAAATACACATAGTATCACTAACTGAA

CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATGAAAATGAAGACACAGCATAC
CCAAACTTATTGGATACAATGAAAGCAGTGCTAAGAGGAAAATTCACAGC
ACTAAGTGTCCCGGTAAAGAAATTGGAGAGATCCTATACTAGCAACTTAA
CAGCACACCTGAGAGCTCTAGAACAAAAAGAAGCAAATATATCTAAGAGG
AATAGAGATCAGGAAATAGTCAAACTCAGAGCTGATATCAATTAAATAGA
AACAAAGAGAACTATACAAAGAATCAAAAGCCAAAACTATCATTCACCAT
GATTAAGGAGGCTTTATCCCAGGGATGCAGGGATGGTACAATATATGGAA
ATCCATCAATGTAATCCATTATCTAAACAAACTCAAAGAAAAAACCCATA
TGATTATCTCATTAGATGCTGGGAAAGCCTTTGACAATATGTAACGCCCT
TTCATGTTCAAAGTATTGGAGAGATCAGGAAATCAAAGTTCATACTTAAA
CATAATAAAAGCAATATACAACAAACCAATAGGCAACTTCAGAATAAATC
GAGAGAAATTTGAAGCAATCCCACTAAAATCAGGGACAAGACAAGGTTGC
CCACTCTACCCATATCTATCCCATACAGTACTCAAAGTTCTAGCTAGAGC
AGTAAGACAACAAAAGAAGATCAAGGGGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no325_n08.b1 MSMg01no325_n08.b1 CHROMAT_FILE:
MSMg01no325_n08.b1 PHD_FILE: MSMg01no325_n08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:25 2005
         (683 letters)



>mm_chr7_114022382_114023464
          Length = 1083

 Score = 1282 bits (663), Expect = 0.0
 Identities = 675/679 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctggggtaatggcactaagaatactatacatttatgcatgaatttatcaaaataa 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 883 gaattctggggtaatggtactaagaatactatacatttatgcatgaatttatcaaaataa 824

                                                                       
Query: 65  caaaattagtaagagaaaaaaagaaaacagattgagttaatgtgaatagataattagtgg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 caaaattagtaagagaaaaaaagaaaacagattgagttaatgtgaatagataattagtgg 764

                                                                       
Query: 125 agaataaagtagatgaaattcattttgtgatgtttcttttactaacttagaggttgaaat 184
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 agaagaaagtagatgaaattcattttgtgatgtttcttttactaacttagaggttgaaat 704

                                                                       
Query: 185 actgtgccaatgactgaaagggacgaggttgtaagttttgatgctggggcaaatcagaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 actgtgccaatgactgaaagggacgaggttgtaagttttgatgctggggcaaatcagaat 644

                                                                       
Query: 245 ccatatagatttttataattataatcaaaggcaatggagaaaagtttcaggcaaaaatta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 ccatatagatttttataattataatcaaaggcaatggagaaaagtttcaggcaaaaatta 584

                                                                       
Query: 305 ttgtaaaggagcaaaatttttaggaagtcaatgaaatttaaatcctagaaaaggttagcc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 ttgtaaaggagcaaaatttttaggaagtcaatgaaatttaaatcctagaaaaggttagcc 524

                                                                       
Query: 365 attgatagatagctgtaaatgaagaaaacctatgtatgctattcgaatacaggtgcaggt 424
           |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 523 attgatagatagttgtaaatgaagaaaacctatgtatgctatccgaatacaggtgcaggt 464

                                                                       
Query: 425 gagtaggagactcagagagaaaaagagcaggtctaaatgaagtatggagcgagtttgtca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 gagtaggagactcagagagaaaaagagcaggtctaaatgaagtatggagcgagtttgtca 404

                                                                       
Query: 485 gattaaacccaattcattcatagcaattttttggaaataaatgtgtaaattattcataaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 gattaaacccaattcattcatagcaattttttggaaataaatgtgtaaattattcataaa 344

                                                                       
Query: 545 tggaaacctaagtgggcctgagaactataacaatatagtttttctaggcaggagaggatg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tggaaacctaagtgggcctgagaactataacaatatagtttttctaggcaggagaggatg 284

                                                                       
Query: 605 tagaaaagttgtgagagacaggtggtaggagactccaaagagtacaacaggataaataca 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tagaaaagttgtgagagacaggtggtaggagactccaaagagtacaacaggataaataca 224

                              
Query: 665 catagtatcactaactgaa 683
           |||||||||||||||||||
Sbjct: 223 catagtatcactaactgaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1083
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1073
Effective search space:   722129
Effective search space used:   722129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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