BAC Information

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BAC

Clone NameMSMg01-326B14
Chromosome7 (Build37)
Map Location 15,160,791 - 15,161,095
singlet/doubletsinglet
Overlap geneB430211C08Rik
Upstream geneEG666256, LOC666267, LOC100042624, LOC100043194, Sult2a1, EG620627, EG434121, EG629203, LOC677512, EG629219, EG434123, 2810007J24Rik, EG638251
Downstream geneEG194588, LOC666352, EG666312, LOC666365, LOC671978, LOC100042677, LOC100042685, EG666381, LOC100042691, LOC100042702, LOC100042707, LOC100042711, LOC100042714, LOC100042717, LOC100042721, LOC100042728, LOC100042731, LOC100042735, LOC100042739, LOC100042742, LOC235841, EG666407, LOC666337, Obox2, LOC100042753, LOC100042756, LOC100042758, EG545921, LOC100042762, Obox1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326B14.T7 (MSMg01no326_b14.b1)MSMg01-326B14.TJ (MSMg01no326_b14.g1)
ACCAG443813AG443814
length731733
length of high quality
(start - end)		680 (49 - 728)652 (79 - 730)
definitionCHROMAT_FILE: MSMg01no326_b14.b1 PHD_FILE: MSMg01no326_b14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:44 2005CHROMAT_FILE: MSMg01no326_b14.g1 PHD_FILE: MSMg01no326_b14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATTGTTATCTCATATTCTTAGCTCATATAAAACCCCACCATT
GTTTTCCTTCCCACACAGTCCCTCACTCCTCTTTTTTTACATTAATTTAT
TTATTTTTATTATTTTCTTTATATACATTTCAAATGCTATCCTGAAAGTT
CCCTATACCCTCCCCCTCTGCCCTGCTCCCCTACTCACCCACTCCCTCTT
CTTGGCCCTGGCATTTCATGTACTGGAGCATAAAAAGTTTGCAAATACCA
AGGGGCCTCTCTTCCCAGTGATGGCCGACTAGGCCATCTTCTGCTACATA
TGCAGCTAGAGACACAAGCTCTGGGGTACTGGTTAATTCATATTGTTGTT
CCACCTATAGGGTTGCACACACCTTCAGCTACTTGGCTGCTTTCTCTAGC
TTCTCCATTGGGGGCCCTGTGTTCCATCTGATAGAAGACTGTGAGCATCC
ACTTCTGTATTTGCCAGTCACTGGCATAGCCTCATACGAGACAGCTATAA
CAGGGTCCCTTCAGCAAAACCTTGCTGGCATATGCAATAGTGTCTGGGTT
TGGTGGCTGATTATGGAATAGATCCCCAGGTGGGGTAGTCTCTGAATACT
CCACCCTTTTGTCTTAGCTCCAAATTTTGTCTCTGTAACTTTTTTCATGA
GTATTAGGTTCCCTATTCTAAGGAGGAACGN

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTTTTTTCAATTAATAATTA
TTTTTTATTGAATATTTTCTTTATTTTTAATTTTTAAACAATTTTTATTA
GATATTTTCTTCATTTACATTTCAAATGCTATCCTAAAAGTCCACTATAC
CCTCCCACTGCCCTGCTCTCCAACCCACTCACTCCTGCTTCTTGGCCCTG
GCATTGCCCTGTACTGGGACATATAAAGTTTGCAAGACCAAGGGGCTCTC
TTCCCAACGATGGCCAACTAGGCCATCTTGAGAATTCTTTTTTTAGCTCT
GTACCCCATTTTTAATAGGATTATTTGGTTCTCTGAATTCTAACTTCTTG
AATTCGTTGTATATATTACAACTAAGCCCTCTATGAAATATAGGATTGGT
AAAGATTTAGAGTTGCTTATGTATTCTATTATATCATCTGCAAATAGTGA
TATCTTGACTTCTTCCTTTCCAATTTGTATTCCTTTTGTTTTTTAATTGC
TCTGGCTAGAACTTCAAGTACTATATTGAATAAATAGGGAGCAGGCTTTT
CTTGTCCCTGCTTTTAGTGGGAATGCTTCAGTTTTCTCTCTATTTAGTTT
GATGTTGGCTACTGGTTTGCTGTATATTGCTTTTACTATGCTTAAATATG
TGCCTTGAACTCCTGAACTTTCCACGATTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_b14.b1 MSMg01no326_b14.b1 CHROMAT_FILE:
MSMg01no326_b14.b1 PHD_FILE: MSMg01no326_b14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:44 2005
         (680 letters)



>mm_chr7_15160791_15161870
          Length = 1080

 Score =  584 bits (302), Expect = e-171
 Identities = 305/306 (99%), Gaps = 1/306 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattgttatctcatattcttagctcatataaaaccccaccattgttttccttccc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gaattcattgttatctcatattcttagctcatataaaaccccaccattgttttccttccc 246

                                                                       
Query: 65  acacagtccctcactcctctttttttacattaatttatttatttttattattttctttat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 acacagtccctcactcctctttttttacattaatttatttatttttattattttctttat 186

                                                                       
Query: 125 atacatttcaaatgctatcctgaaagttccctataccctccccctctgccctgctcccct 184
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 185 atacatttcaaatgctatcctgaaagttccctatacc-tccccctctgccctgctcccct 127

                                                                       
Query: 185 actcacccactccctcttcttggccctggcatttcatgtactggagcataaaaagtttgc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 actcacccactccctcttcttggccctggcatttcatgtactggagcataaaaagtttgc 67

                                                                       
Query: 245 aaataccaaggggcctctcttcccagtgatggccgactaggccatcttctgctacatatg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66  aaataccaaggggcctctcttcccagtgatggccgactaggccatcttctgctacatatg 7

                 
Query: 305 cagcta 310
           ||||||
Sbjct: 6   cagcta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space:   716900
Effective search space used:   716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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