BAC Information

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BAC

Clone NameMSMg01-327J02
Chromosome7 (Build37)
Map Location 139,579,442 - 139,579,556
singlet/doubletsinglet
Overlap genenone
Upstream geneAcadsb, Hmx3, Hmx2, Bub3, LOC677073, LOC100043679, Gpr26, Cpxm2, 4631426J05Rik, LOC100043682
Downstream geneLOC100043683, Oat, Nkx1-2, 2310007H09Rik, A930008G19Rik, 2010208K18Rik, C430003P19Rik, Zranb1, Ctbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-327J02.T7 (MSMg01no327_j02.b1)MSMg01-327J02.TJ (MSMg01no327_j02.g1)
ACCAG444893AG444894
length804815
length of high quality
(start - end)
---116 (76 - 191)
definitionCHROMAT_FILE: MSMg01no327_j02.b1 PHD_FILE: MSMg01no327_j02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:30 2005CHROMAT_FILE: MSMg01no327_j02.g1 PHD_FILE: MSMg01no327_j02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATAATTGCGGCGCCAAANGAANCACACATTTCTAACCCGCCGGAANC
AGNNCTNATAACTGGACCGAGAGNAGGACCCGGNCNCAGCCCGAGGGGCC
CGGGNGGCACGGCCGCGGCAGAGCGGCGGGGCGGGAACAGGACCCNCACG
CGCACCAGAGAGAGGCCCAGCACACGACAAGAGACCCGCACGCCGGCCAA
GAGAAGGAACCACACCAGGAGGAGAGAGGGCCCGCCAACCATTTTTTTTG
AAACTTAGCCTCAGCGGTTATATAACATATGCCTTTTGGTGCCGAAGGCA
GCACAGGGTTTTTACTCTTTTTACCCCGCCGCCCAAGAAACAAAAGAACA
AAATTTTTTTTCCCCCCCCCCCTCCCCATATTTCTTCATCCACTAATCCA
ATCACTCTGGTCCCCCACCCTGTATCTCTTCCAATCTACTTCTCTACATA
ATGATACTTCACTTTTCTACCCCTTTCCCCCACCCCCTCTACTCATGTCT
ACTTTCATACATCTTTCTCTTACTATTGACCATTTCCCGATAAAATCGGC
TCCTTTATTCACTTCTTTGGCTCATACTAACTCTTGATCTTATTATTTTC
ATCTCCTTTTTTGCACTCTTTTCATTTCCACATTTTGTTGCTTTTTCCGT
TTCCTGCTTTATTATATAAAATCCCCCTTTACCCGACTCACCTTTATTTT
TTTTTTTTTACGCCACAAATCGAATATACAACGTCTATCTTTCTTAACTT
CTCTCGTTAAAGTCTTTCCCGCTTCTCTCCCGACGCCATAGCAGTCTAAA
TCAG
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTGCGAAAAATTACAGAGATCTCTCGCAGCACTTTAAA
AATGAAGAAGTTACTTTACTGACCCCAGCTACCTCACACACGACTCAGAC
CACACACGGATATTATCCTCTCGGTTCTCATTTGCTCCCAAGATTTATGA
GATGTTTCTTTTGTTTAATGTTGCTTTCAACCAGTTGGCTGCTTTTAATA
AATGATTATCACTCACAACACCCCGACACACACACACACACACACGCACA
CACTATTCTGGATCAGGAGCATATATTAGTAGCATAACTTAAAGTTAAGG
CTGTGCATTTACGGCACGTTGTAAAAGCTGATCGGCATGGGGAAGCCAAA
GCGTGGTAGGATGGGTGACCCCACTCTCTCAAAGGTTAGTTAAACTGATA
GGCCCTATTATCACGCGGGGCAGTAGGCTGAGTATATAGTCTTTTGTTTG
GTTGGTTGGTCGGTTGCTTTTTTCGTTACGTTTCTCTTACCTCTCCCCCT
TCTCTCTATTCTTTCTATATTCGCTTATATATTCCCTTACTCTTTATCAT
TTTCTTCTTTCTTATTTTACTTCTTTTTCTATTATTTGTCTTACCATTAT
TCTTCCTCCTCTTATCTTATCTTACTTCTTTCATTTAGGTTCTTGTTCGA
TTCTTATCTTGGTCAAATTTTAATTCAATCGGTTTATATTAATCTATAAT
CTTTTAACTCCTCACTTATTTTTCAACAATATTATTTTCTTTATAATTAG
TATATTGAAGTATGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no327_j02.g1 MSMg01no327_j02.g1 CHROMAT_FILE:
MSMg01no327_j02.g1 PHD_FILE: MSMg01no327_j02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:30 2005
         (116 letters)



>mm_chr7_139579241_139579756
          Length = 516

 Score =  207 bits (107), Expect = 2e-58
 Identities = 113/115 (98%)
 Strand = Plus / Plus

                                                                       
Query: 2   agagatctctcgcagcactttaaaaatgaagaagttactttactgaccccagctacctca 61
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 202 agagatctctcgcagcactttaaaaatgaagaagttactttactgaccccagctgcctca 261

                                                                  
Query: 62  cacacgactcagaccacacacggatattatcctctcggttctcatttgctcccaa 116
           ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 cacacgactcaaaccacacacggatattatcctctcggttctcatttgctcccaa 316


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 116
Length of database: 516
Length adjustment: 8
Effective length of query: 108
Effective length of database: 508
Effective search space:    54864
Effective search space used:    54864
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)