BAC Information

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BAC

Clone NameMSMg01-328H24
Chromosome7 (Build37)
Map Location 75,248,591 - 75,419,854
singlet/doubletdoublet
Overlap geneIgf1r, C330024D12Rik
Upstream geneLysmd4, Mef2a, EG665304, Lrrc28, Ttc23, Dmn, LOC665319, LOC100041771
Downstream geneEG434197, LOC100041800, EG384639, Arrdc4, LOC384741
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-328H24.T7 (MSMg01no328_h24.b1)MSMg01-328H24.TJ (MSMg01no328_h24.g1)
ACCAG445582AG445583
length793756
length of high quality
(start - end)		158 (51 - 208)295 (80 - 374)
definitionCHROMAT_FILE: MSMg01no328_h24.b1 PHD_FILE: MSMg01no328_h24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:40 2005CHROMAT_FILE: MSMg01no328_h24.g1 PHD_FILE: MSMg01no328_h24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,419,704 - 75,419,854)(75,248,591 - 75,248,885)
sequence
NNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTTTCCACTCTCCTGAAGCCAGAATTTTTGACTTCAGTGC
CAAAAAGAATGTCAGAGTAAGTCGTTGTGTCGAAGAGTCACAGTTTATTA
GATTTTAAACATAGATTTAAGGTTAGTGGTAGAAAGATAGGTGTTGGGGG
AAGGNTNNNNNNNTTNTNTNTNTTTCTCTTTCTTTTCTTCTCTTCTTTCC
TCTCCCTTTTCCTTTTTTTTTCTCTTTNTTTTCTTCTTTTTCCTTTCTTC
TCNCCCCTCCCCCCCCCCCCCCCTCTTTTTTTTTTTCTCTCTCCCCCCTC
TTTTTTTTTTCTTTCCTTTTTTTTCTTCCCTCCTCCCTTCCTCTCTCTTT
TTTTTTTTTTTTTTCTTTTTTTTTTTTCCCCCCCCCCTTCCCNNNATATT
TTTTTTNTGNTTTTTCTGCTTTCCTCTCCTTTTCTTTATTTGTTTCCTTT
CTGTCTTTTTTCTGTGTCTTTTTTATACCTCATCTATGTTCTTTTCTTTC
TTCTTTTTTACCTTCTCTCTCGTTTACTAGTATATTCTTCATTCCTTTTC
CTCATTTTGTCTCTTTTATCGCTTTCTTTCGTTGTTTTTTTNTTCTGTTT
CTTTTGTCTTCTATTCTTCTCTTTACTTTTCCCTTCCTCGTCGTTTCTTT
GTCTACCTTAATGTGAGTGTAACCGTTCTTATCTTTCTCTTTTTTCTTTT
CCTTCTTTTTTTCTTTCTTTTTTCCTCCTACTTCTTTTTTTCG

NNCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCCCCTGACATCTCTGGTC
TTCTGCAAGGGCCCTTTGTGTTAGTCACTTGGTCAGCACAGAAGCCTCTG
CCTTAATGCAGCCCTCTGCTTGGTCTCCTTCATTACAACCTGTCTTTCTG
TCTATCCCCCGCTTCCTGCTCTAGATCACGGCTTGGTTGTTGTGTCCGCC
CCGCTAAGTTATGATTCTCACCTGTTGGCTGTAATTCACAATGGCTCCCT
AGTGTCTGTAATGTGATGTCTTAACTGTATGTTATCCCCACCGGATACCT
AAGCTTGTCTGCGGCTGCTCCACGGAAGTGCAGACCTTGGACTGGGTTTC
TGATCCTTCTGTCAAGATGCTTGTTCCCCCCCCCCCACTCTCATGCCTTC
TTGAACCTGACAGAAATTCCTTTGCGTGATTTCCCCCCTTGACTGTCCAT
CCCCTGCTAACAACTGGCTTTTTATATCTCTCCCTTATTATTTTCATATC
TCTCTTTAACGATTTCCTATTACTTCTATCCTGACTTTTTGATTTTTATA
CTTCACCATTCATGTGTCTTTACCGTCTCTTTTTTTTTTCTCCCATTCCT
TCCTCTTAAATTATTTACCCTCTTCTACCTCTTCGATCTTTTTACCTACT
TCTATATATTCTTTTATCCTCTTCTTTTATTTTTGTACCACATTTTCTCT
TATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no328_h24.b1 MSMg01no328_h24.b1 CHROMAT_FILE:
MSMg01no328_h24.b1 PHD_FILE: MSMg01no328_h24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:40 2005
         (158 letters)



>mm_chr7_75419501_75420058
          Length = 558

 Score =  269 bits (139), Expect = 6e-77
 Identities = 148/151 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttttccactctcctgaagccagaatttttgacttcagtgccaaaaagaatgtc 63
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ggaattcttttccactctggtgaagccagaatttttgacttcagtgccaaaaagaatgtc 295

                                                                       
Query: 64  agagtaagtcgttgtgtcgaagagtcacagtttattagattttaaacatagatttaaggt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 agagtaagtcgttgtgtcgaagagtcacagtttattagattttaaacatagatttaaggt 235

                                          
Query: 124 tagtggtagaaagataggtgttgggggaagg 154
           |||||||||||||||||||||| ||||||||
Sbjct: 234 tagtggtagaaagataggtgttaggggaagg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 158
Length of database: 558
Length adjustment: 8
Effective length of query: 150
Effective length of database: 550
Effective search space:    82500
Effective search space used:    82500
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no328_h24.g1 MSMg01no328_h24.g1 CHROMAT_FILE:
MSMg01no328_h24.g1 PHD_FILE: MSMg01no328_h24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:40 2005
         (295 letters)



>mm_chr7_75248391_75249085
          Length = 695

 Score =  555 bits (287), Expect = e-162
 Identities = 293/295 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcccccctgacatctctggtcttctgcaagggccctttgtgttagtcacttggtcagcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcccccctgacatctctggtcttctgcaagggccctttgtgttagtcacttggtcagcac 260

                                                                       
Query: 61  agaagcctctgccttaatgcagccctctgcttggtctccttcattacaacctgtctttct 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 agaagcctctgccttaatgcagccctctgcttggtctcctccattacaacctgtctttct 320

                                                                       
Query: 121 gtctatcccccgcttcctgctctagatcacggcttggttgttgtgtccgccccgctaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtctatcccccgcttcctgctctagatcacggcttggttgttgtgtccgccccgctaagt 380

                                                                       
Query: 181 tatgattctcacctgttggctgtaattcacaatggctccctagtgtctgtaatgtgatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatgattctcacctgttggctgtaattcacaatggctccctagtgtctgtaatgtgatgt 440

                                                                  
Query: 241 cttaactgtatgttatccccaccggatacctaagcttgtctgcggctgctccacg 295
           |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttaactgtaggttatccccaccggatacctaagcttgtctgcggctgctccacg 495


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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