Query= MSMg01no329_f07.b1 MSMg01no329_f07.b1 CHROMAT_FILE:
MSMg01no329_f07.b1 PHD_FILE: MSMg01no329_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:44 2005
(536 letters)
>mm_chr7_122438210_122439145
Length = 936
Score = 849 bits (439), Expect = 0.0
Identities = 462/475 (97%), Gaps = 11/475 (2%)
Strand = Plus / Minus
Query: 68 gctttgcatagctgctgatggggtgcatgctcagagactgggtttggaagccagctgggc 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936 gctttgcatagctgctgatggggtgcatgctcagagactgggtttggaagccagctgggc 877
Query: 128 cgatgggaaagtcagagggatgtgtgcagaggcacttccagcgactaccagaga-ccccc 186
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 876 cgatgggaaagtcagagggatgtgtgcagaggcacttccagcgactaccagagacccccc 817
Query: 187 cctctcagaattgcattttgaaatgcataaaataaaatacattggattacaaagcaagcc 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 cctctcagaattgcattttgaaatgcataaaataaaatacattggattacaaagcaagcc 757
Query: 247 aattatattgaaattcagttctatccacagaccccttggggggtccctagattaagaagg 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 aattatattgaaattcagttctatccacagaccccttggggggtccctagattaagaagg 697
Query: 307 cctgctaggatttcttttcaacatgaaattatatg-----cccccatgacctatgagtgc 361
||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 696 cctgctaggatttcttttcaacatgaaattatatggtttt-----atgacctatgagtgc 642
Query: 362 ggattgtgttactctgccaggaggtggctgagtatagccttgtctggtctaagtagaaat 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 ggattgtgttactctgccaggaggtggctgagtatagccttgtctggtctaagtagaaat 582
Query: 422 gatttcaaaggaaaaatgtgctcgcccaacctgacaatcccctgcagcctggggactata 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 gatttcaaaggaaaaatgtgctcgcccaacctgacaatcccctgcagcctggggactata 522
Query: 482 aatggtactggtggactctctcgctctctctttttctttttcatggtgtttgttt 536
|| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 521 aacggtactggtggactctctcactctctctttttctttttcatggtgtttgttt 467
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space: 487076
Effective search space used: 487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no329_f07.g1 MSMg01no329_f07.g1 CHROMAT_FILE:
MSMg01no329_f07.g1 PHD_FILE: MSMg01no329_f07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:45 2005
(506 letters)
>mm_chr7_122280701_122281606
Length = 906
Score = 893 bits (462), Expect = 0.0
Identities = 495/510 (97%), Gaps = 8/510 (1%)
Strand = Plus / Plus
Query: 1 aattcttttagctcaagctcatggtacaggagcatgaggcagttgttcacattacatcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattcttttagctcaagctcatggtacaggagcatgaggcagttgttcacattacatcca 260
Query: 61 cagtcagaagagagtaatggctgtgtctatgctagcgttgtttagtttgctgtctccatt 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 cagtcagaagagagtaatggctgtgtctatgctagcattgtttagtttgctgtctccatt 320
Query: 121 ttatacagtttgggatccctgcccaaggaatggtcccactaacaattagaacaactcttc 180
|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 ttatacagttcaggatccctgcccaaggaatggtcccactaacaattaaaacaactcttc 380
Query: 181 ccacatcaattcacatgatcaaaataatcccccagaagcatgctcagagacctggtgatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccacatcaattcacatgatcaaaataatcccccagaagcatgctcagagacctggtgatt 440
Query: 241 ctagattctgttttt----ttggcaaggaacactgccagtcacacgtacccaattttatt 296
|||||||||| | |||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 441 ctagattctg----tccagttggcaaggaacactgccagtcacacctacccaagtttatt 496
Query: 297 tttcttcgtttaaaggaaggaggatgtctacttccaagggttgtaacaaagtcatgccat 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tttcttcgtttaaaggaaggaggatgtctacttccaagggttgtaacaaagtcatgccat 556
Query: 357 atcaggaattccggtttttagttccagaaatagccataataatggaaacatagcctgact 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 atcaggaattccggtttttagttccagaaatagccataataatggaaacatagcctgact 616
Query: 417 gagttcccttacacagaaggctatgtagaggtaagcagctgcagaggtagcttaatggtg 476
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gagtttccttacacagaaggctatgtagaggtaagcagctgcagaggtagcttaatggtg 676
Query: 477 tcactgatgtcttgccagttctctttcctg 506
||||||||||||||||||||||||||||||
Sbjct: 677 tcactgatgtcttgccagttctctttcctg 706
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space: 444416
Effective search space used: 444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
