BAC Information

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BAC

Clone NameMSMg01-329H08
Chromosome7 (Build37)
Map Location 82,997,934 - 82,998,273
singlet/doubletsinglet
Overlap geneKlhl25
Upstream gene0610006L08Rik, Sv2b, 1500012K07Rik, LOC100042171, Akap13
Downstream geneLOC100042210, LOC434200, EG244071
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-329H08.T7 (MSMg01no329_h08.b1)MSMg01-329H08.TJ (MSMg01no329_h08.g1)
ACCAG446289AG446290
length872812
length of high quality
(start - end)
243 (102 - 344)341 (127 - 467)
definitionCHROMAT_FILE: MSMg01no329_h08.b1 PHD_FILE: MSMg01no329_h08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:55 2005CHROMAT_FILE: MSMg01no329_h08.g1 PHD_FILE: MSMg01no329_h08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTTCCCCCTCCCTTCTCCTTTTACTTTCAACCTTTTTTTTTCCCTT
CTTCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTTTATTATCATTATTATTATTAATCGTTTTATTTGTTT
GCATTTCAATTGTTATCCCTCTTCCGGGTCTCTACTCCATGAACCCTCCA
TCAACTCCCCCACCCACTTTCGCCTCACCCCTCCAACATCCCCCTTCTCT
GGGGCATCAAGTCTCCTCAGGACTAATCACCTCCTCTCCTACTGATTCTG
GATGAGGCAGTCCTCTGCTACATATGTAGCGCGAGCTCTGACGCATTCTG
TTTAATTGATACTCTTGTTCTTCCTATGGAGTTGCATTCTTCCACTGTGA
TCCCCCGCTCACTCCTATGGTTGGCTGTGAGCACCTGCTTCTGTCTTATT
CATTACTGTTCAGAATGTCTCACACCCACATCTTTTTTTTTGCTGTAAGC
ACATCTTACATCTGCTAATTCACATCTCGCCTTTTTTCCCATTTGTTGTT
CCTTTGCCCGTCTTCCTACCTTTCTTCTTCGTCCTTTTTCATATTTTTCC
TGCTCCTTTTTTTTACTTTTTTGTCCTTCCCTTTCTTTTTTTTATCCCCC
CCCATTTTTTCTTTTTTTTATATTCCCCATTCCCCATCTTTCCTTACATT
TTCCCTCCCTCTTCTTTTTCTTTTTCTCCCTTTTCCCCCACTTATTTTTT
TTTTATTTTTCCCCCTCCCTCCTCTGTTTAACTATTCCAACACTTTCGCT
TCTACCTATTACCCTTTACCACTTTTTATTTTGTACCACTTTTACTTTCT
TCTATCACAACCATCCATTACT
TCTTTTTTCCCTTTCTTTCTTTCCCTTCCTTCTCCTTTACATCCTCCTTT
CCACTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTGTTACCCGAAATTCCAGAACCTGGCAGAAAACAGAT
GATGCAACATGCTCACTGGACACATCTGGAAAATGAGACTAACCATGTCC
ACTTGCTCTCCTCTCCTGCATGGCAACGGCACTCTCAACAGTATAACTCG
TACCCTAGCTAAGCTCTGATCACTGACTACCAACCCCATACACCACAAGC
TAAGGTCCTCTGGAAACTCTTGGAGCCCAACCTCCCTCCACAGTGTCGCC
TACAAGACAAGCCACTCAGAACAGCACAGCACACCTTTCACAGAGGCGTG
CACAGATAAAAGGGCTTACTACCCAGTCTCTCAGGCCCCGTGGGGAGCTT
CTCTCTGGACTCTGTGCGCCCCTACCTTGGCTGTCTACAAAAGGCCTCTG
TGCCTCCTGACCCTCACCCCTACCCATACAAAAAGGCCTAGCTATGCATA
TCTGGTAAGCAGTTCATCTTGGCGCTTGAACTATAAGAGAATCTCTTTAT
CTTAATCAGGAGAACAATTCCACTTGGCCCCACATTGATCAATGCCCTTG
ATCCTTTCTGCCTACCAACACTAACCGCCATCTTTACCTTTCTTCCTGTT
TTCCTCTTTTTATTCCCAATTAACCNTCCTCATTCCTCTCGTATACTACC
TCCCGCCCTCATCCCTCTACTTGCCTTCGTCAATGTATATCTTTCCACAC
ACTTATCCCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no329_h08.g1 MSMg01no329_h08.g1 CHROMAT_FILE:
MSMg01no329_h08.g1 PHD_FILE: MSMg01no329_h08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:55 2005
         (341 letters)



>mm_chr7_82997734_82998474
          Length = 741

 Score =  642 bits (332), Expect = 0.0
 Identities = 338/340 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccagaacctggcagaaaacagatgatgcaacatgctcactggacacatctggaaaatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 tccagaacctggcagaaaacagatgatgcaacatgctcactggacacatctggaaaatga 481

                                                                       
Query: 61  gactaaccatgtccacttgctctcctctcctgcatggcaacggcactctcaacagtataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gactaaccatgtccacttgctctcctctcctgcatggcaacggcactctcaacagtataa 421

                                                                       
Query: 121 ctcgtaccctagctaagctctgatcactgactaccaaccccatacaccacaagctaaggt 180
           ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 420 ctcgtaccctagctaagctctgatcactgactaccaaccccgtaccccacaagctaaggt 361

                                                                       
Query: 181 cctctggaaactcttggagcccaacctccctccacagtgtcgcctacaagacaagccact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 cctctggaaactcttggagcccaacctccctccacagtgtcgcctacaagacaagccact 301

                                                                       
Query: 241 cagaacagcacagcacacctttcacagaggcgtgcacagataaaagggcttactacccag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 cagaacagcacagcacacctttcacagaggcgtgcacagataaaagggcttactacccag 241

                                                   
Query: 301 tctctcaggccccgtggggagcttctctctggactctgtg 340
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 tctctcaggccccgtggggagcttctctctggactctgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)