Query= MSMg01no329_h19.b1 MSMg01no329_h19.b1 CHROMAT_FILE:
MSMg01no329_h19.b1 PHD_FILE: MSMg01no329_h19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:57 2005
(437 letters)
>mm_chr7_108136229_108137065
Length = 837
Score = 837 bits (433), Expect = 0.0
Identities = 436/437 (99%)
Strand = Plus / Minus
Query: 1 gcgggtggaggcagtccacagcttaacttctaggttgtcagttcctggagctgtctctgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 gcgggtggaggcagtccacagcttaacttctaggttgtcagttcctggagctgtctctgt 578
Query: 61 gctgtttcacggctgtgctttgaccatggtaggatccgggtttttgatgctgcactgctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 gctgtttcacggctgtgctttgaccatggtaggatccgggtttttgatgctgcactgctg 518
Query: 121 ccccttggtggtcaaatcctgatgaggactcagggaatggagaagagtcatctattgcga 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 517 ccccttggtggtcaaatcctgatgaggactcagggaatggagaagagtcgtctattgcga 458
Query: 181 tctatctggatgaattcgtgagctgtttggtagtcaggctgttgctggatcagggtaatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tctatctggatgaattcgtgagctgtttggtagtcaggctgttgctggatcagggtaatg 398
Query: 241 gtgggataggaacaatggattgacagaggatctagcatgtttattgtcacttaccaacta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gtgggataggaacaatggattgacagaggatctagcatgtttattgtcacttaccaacta 338
Query: 301 agtgacagtggctgattctgcctctgccatagtgtcagcttcctccctccccagccaggg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 agtgacagtggctgattctgcctctgccatagtgtcagcttcctccctccccagccaggg 278
Query: 361 ctggagatcattctgttctgggcactcatttgcctgtgggaaagccctattcagtgctca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ctggagatcattctgttctgggcactcatttgcctgtgggaaagccctattcagtgctca 218
Query: 421 gtcacagccaaagaagg 437
|||||||||||||||||
Sbjct: 217 gtcacagccaaagaagg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space: 354384
Effective search space used: 354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no329_h19.g1 MSMg01no329_h19.g1 CHROMAT_FILE:
MSMg01no329_h19.g1 PHD_FILE: MSMg01no329_h19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:57 2005
(272 letters)
>mm_chr7_107982552_107983223
Length = 672
Score = 464 bits (240), Expect = e-135
Identities = 267/280 (95%), Gaps = 9/280 (3%)
Strand = Plus / Plus
Query: 1 ctcacatggggagcagtcatggaactggctgcagcccagctggagaaatcctgtgccagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 ctcacatggggagcagtcatggaactggctgcagcccagctggagaaatcctgtgccagg 253
Query: 61 gc-------tttccagggagacc-aggagggatgggctaaaactcagaaatgtagagtct 112
|| |||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 254 gcaggaggatttccagggagaccaagg-gggatgggctaaaactcagaaatgtagagtct 312
Query: 113 caagtattcagagggataagaaagatggcacacaagatgggcatattgagcaaggcttag 172
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 313 caagtattcagagggataagaaagatggcacacaagatgggcatattgagcaagacttac 372
Query: 173 agtataggtgagggaagtgcaagcagaagactcagtgtggtccagtctcaggaaagaaag 232
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 373 agtataggtgagggaagtgcaagcagaagacttagtgtggtccagtctcaggaaagaaag 432
Query: 233 ggttaaagcatgtgggaaatagggggagagtggagggggc 272
|||||| |||||||||||||||||||||||||||||||||
Sbjct: 433 ggttaaggcatgtgggaaatagggggagagtggagggggc 472
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 672
Length adjustment: 9
Effective length of query: 263
Effective length of database: 663
Effective search space: 174369
Effective search space used: 174369
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
