BAC Information

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BAC

Clone NameMSMg01-329P16
Chromosome7 (Build37)
Map Location 130,772,889 - 130,773,385
singlet/doubletsinglet
Overlap genenone
Upstream genePrkcb1, Cacng3, 4930413G21Rik, Rbbp6, LOC628696, LOC100042977, LOC100042981, Tnrc6a, Slc5a11, Arhgap17, Lcmt1, Aqp8, Zkscan2, LOC100043482
Downstream geneEG628779
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-329P16.T7 (MSMg01no329_p16.b1)MSMg01-329P16.TJ (MSMg01no329_p16.g1)
ACCAG446656AG446657
length782743
length of high quality
(start - end)		275 (46 - 320)557 (76 - 632)
definitionCHROMAT_FILE: MSMg01no329_p16.b1 PHD_FILE: MSMg01no329_p16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:37 2005CHROMAT_FILE: MSMg01no329_p16.g1 PHD_FILE: MSMg01no329_p16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCACACCCCTACCCCCCTTACCCCATAAAAACCCCTAGCTTTCGAG
CCTCGTGGCCGACATCCGTTATCTCCTGTGTGGGATGCATGTGGGTCCGG
AGCTCTGTCATTAAACGACCTCATGTAATTACATCAAGATGGTCCTTTGT
GATTTTTTGGGTGCACGCCGAATTGGGAATTGAGTGGGGGTTTCCCCACT
AGGTCTATCACTATTACTTCAAGCCCTGAGCTCTCCCTTTGTAGACATTA
TCTAACGTGAGTAACAGGACATATGAAAAGCAAGAATGAACAAGGAGAAA
TGGATAATCATATATATAATGTAACACAAGGTGGTCTTCAGATTAGGTCC
TCATCAATGGTTGCCCCCCCCCACCCCCTCATTTAATGGATGCCATTTTT
ATTGTTCTACTACTGTTGGACACATTATTACCATGTTAGGAACCTGTCCC
ATTGTCATTATTGTCTTATCGAACCGTTGAATGTTCATCATATTCCTGCC
TGACATGATTTGCGTCCTACCTTTTTTGTCTGCCCCATCTTATGATTCTT
ATAATCCCCTTTTTCCCTGTTTCCTTCTCTTTCGTCCCCCTTTTATCCCT
TCCCCCTTCTCTCCCCTATTTTTTTTTTTTTTTCCTCCTATCCCCTTTTT
ATCTATAATATAACTTTCATTACCTATATATCCTACCGCATATTCTTTTA
CCCTCTTTTCTTCTCCTCTTCCATTTCTTTTT

CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCACAGAACAAGCAGCTCTACTTCTT
TGCAGCCTTGCATCATGATGCTGTGATGGCCTGCCACACTAACAGCAGCA
AGAACGGACCCAGCTGCCATGAACAGAAAGCTCCGAAACTCTGAGCCAAA
TTAAACATTTTCTCTTTCTAAATAATTTGTCTCAAGTATTTGTCACAGTG
AGAAAACATGAATAAGTGGCCATCTGCTGGAACTAATAAACAGAAATCAT
GATTGTGTACCCCCCAGAGCCCTCTCCATCCCTGGACTCAGATCGTTAAC
TAGCTACTGAACACCAACGTGTAGAGTAACTGACTGAAGGCTCAGACTTG
GGAGCCTTAGCCTCACCCCGCCACTTACTAATGGTGGCCTTTGGACCAAT
CATTCCATTCCCACATCTCAGTTTCCGTGAGTAATAAACAAGTCATTGTG
TTTGGAGACTGAAAGGATGAGAGAGAGGCACACAGCAAGAGCCACATAAA
CTCTGCTGCTGCCCTTCCTATCCTGACTAACAAGGAACCCACATGTAACT
GATCTAAATGCAATCCTTTGAGTTTGTTTGGTTTGATTTGGTTTGGTTTG
TCCAATATTAACCCCAAATCCTTCAAAATCTTTACTTTCCACATTTACAC
ATTTTCATCGAATCCTACTACTTAAACATTCCAAACTATCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no329_p16.g1 MSMg01no329_p16.g1 CHROMAT_FILE:
MSMg01no329_p16.g1 PHD_FILE: MSMg01no329_p16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:37 2005
         (557 letters)



>mm_chr7_130772889_130773845
          Length = 957

 Score =  915 bits (473), Expect = 0.0
 Identities = 491/497 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacagaacaagcagctctacttctttgcagccttgcatcatgatgctgtgatggcctgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 cacagaacaagcagctctacttctttgcagccttgcatcatgatgctgtgatggcctgcc 438

                                                                       
Query: 61  acactaacagcagcaagaacggacccagctgccatgaacagaaagctccgaaactctgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 acactaacagcagcaagaacggacccagctgccatgaacagaaagctccgaaactctgag 378

                                                                       
Query: 121 ccaaattaaacattttctctttctaaataatttgtctcaagtatttgtcacagtgagaaa 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ccaaattaaacatttcctctttctaaataatttgtctcaagtatttgtcacagtgagaaa 318

                                                                       
Query: 181 acatgaataagtggccatctgctggaactaataaacagaaatcatgattgtgtacccccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 acatgaataagtggccatctgctggaactaataaacagaaatcatgattgtgtacccccc 258

                                                                       
Query: 241 agagccctctccatccctggactcagatcgttaactagctactgaacaccaacgtgtaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 agagccctctccatccctggactcagatcgttaactagctactgaacaccaacgtgtaga 198

                                                                       
Query: 301 gtaactgactgaaggctcagacttgggagccttagcctcaccccgccacttactaatggt 360
           ||||||||||||| ||||||||||||||||||||||||||  | ||||||||||||||||
Sbjct: 197 gtaactgactgaacgctcagacttgggagccttagcctcagtctgccacttactaatggt 138

                                                                       
Query: 361 ggcctttggaccaatcattccattcccacatctcagtttccgtgagtaataaacaagtca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 ggcctttggaccaatcattccattcccacatctcagtttccgtgagtaataaacaagtca 78

                                                                       
Query: 421 ttgtgtttggagactgaaaggatgagagagaggcacacagcaagagccacataaactctg 480
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77  ttgtgcttggagactgaaaggatgagagagaggcacacagcaagagccacataaactctg 18

                            
Query: 481 ctgctgcccttcctatc 497
           |||||||||||||||||
Sbjct: 17  ctgctgcccttcctatc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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