BAC Information

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BAC

Clone NameMSMg01-330A09
Chromosome7 (Build37)
Map Location 6,889,479 - 6,889,794
singlet/doubletsinglet
Overlap geneUsp29
Upstream geneLOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, LOC627961
Downstream geneAurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31, Vmn2r-ps36, V2r5, LOC100041883, EG628117, Vmn2r33, LOC665470, EG665474, EG628368, LOC100042636, LOC665485, EG625353, Vmn2r-ps40, Vmn2r36, LOC638170
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330A09.T7 (MSMg01no330_a09.b1)MSMg01-330A09.TJ (MSMg01no330_a09.g1)
ACCAG446689AG446690
length762761
length of high quality
(start - end)
322 (39 - 360)189 (110 - 298)
definitionCHROMAT_FILE: MSMg01no330_a09.b1 PHD_FILE: MSMg01no330_a09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:40 2005CHROMAT_FILE: MSMg01no330_a09.g1 PHD_FILE: MSMg01no330_a09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTCCGCGGAAT
TCCACAAGTATCTAAGGATGGCCTCAAATTCCTCCTTCCAACTCTTAAGT
GAAGTTGAACTATAAGAACCATACACATTTACAGTACACAACATGGATGC
TCTGATATATGTGTCAATCAAACTATTGACAAACCATCCCCTCTCCATGG
TGAGAACATTTAAGATCTGTCCTAGTGACTTCCAAGTAACATTAGCATTA
AATTGAATTGTTACACTGTCCGAAAGAACATGCAAAAGAAGAAATGGGAG
CCCAGAAGCCAAAAAAACCTCCACCCAATGACACATAGGCCGGTGTGAGA
TGCAGCCAGAGTATTTTCTCTTATCCTCGCGCCCTTGCTCTCCAGCCCTG
CTGCTGTGCTGGCCTCCTGACACTTGATGAGTCAGAGCAGTCCGCTCCCC
GGCTGCCTCCTTCTCGAAGCTCATCTATCCTTGTCCCTGTAGGGTAAATG
GTTTGAAATATTTTATAGCAACTGCAACAACATCTTAAGAGGCCCGATTT
CCCTAATCATGCTCAAACTGTTTTCATCATTATCCTATTGTGCGCCACCT
GTTGGCCGATGACTGCATCTACTGATGAACGGCCCTTAAAGATCTAAAAA
GTTCCAAAAAATCCTATAAACTAAAAAATCTCATGCCTGAAGAAAAGTCC
TGTTTTATCACGTTCCTAAGTCAACCCAACGTTTCACTGGAAAACCCCCT
ACTACAAAGTCN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXAAAGGNAAAAGAAGGCAAGATCTATGGGGCAGGTGACTGCCCAGCCC
AGATGCCCCAACACTGGAAAGGATTTACTTATTTTACGTGTATGCATCTT
GGGTGCCTGTATGTCATGTGCTTCTGTGGAGACCAGAAAGGGACATCAGA
TGCCCTGGAAATGGATTTGCCATGGGAACTGAGGGTCCCCTGCCTGAGCA
GCAAGCAAGCTCCTTTAATCTTTGAGTCATCTTTCGCTAGAATCCGAATT
ATCTTTTTTTTTTTGGGGGAAAGGACACATGNCACGNAANAGGTTTTTTT
TTTTTTTCCCAGCACCCCCCACACAAANTCAGNCAGGGATAGACAGAGAA
ACCCCGNCTCAAAAAACAAAACAAACAAAGGTTTGGGTTGCTCCACCTAT
ACCTGGAATTTATATTGCAGTCCCCAATCTTGCAGCTAGTAAGAGGAAGC
TTTGTCTTAAAGGGTCTTAGTGCATATCAGAAATCCCCACCTTCTAAACC
CAAAAGAGTGGCTGAATTGAAGTTCTCCGTTCCATATCTACCTTACCTTT
CTGGATCTCTGTTATTAATCATGGGCCTAGTGTTCCATAGGGCCCTTGTA
ACTCTTCTTTTTAATTAGGTTTTTAGAACCACTCCAAACTCCACGTTGTA
CATTCCATTTCTGACATGGCCCCCTTTCATTGGCTTTCCCTTCTCTGATG
TATCTAGTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_a09.b1 MSMg01no330_a09.b1 CHROMAT_FILE:
MSMg01no330_a09.b1 PHD_FILE: MSMg01no330_a09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:40 2005
         (322 letters)



>mm_chr7_6889272_6889994
          Length = 723

 Score =  549 bits (284), Expect = e-161
 Identities = 308/316 (97%), Gaps = 1/316 (0%)
 Strand = Plus / Plus

                                                                       
Query: 8   ggaattccacaagtatctaaggatggcctcaaattcctccttccaactcttaagtgaagt 67
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ggaattccacaagtagctaaggatggcctcaaattcctccttccaactcttaagtgaagt 267

                                                                       
Query: 68  tgaactataagaaccatacacatttacagtacacaacatggatgctctgatatatgtgtc 127
           |||||||||||||  ||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tgaactataagaattatatatatttacagtacacaacatggatgctctgatatatgtgtc 327

                                                                       
Query: 128 aatcaaactattgacaaaccatcccctctccatggtgagaacatttaagatctgtcctag 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 aatcaaactattgacaaaccatcccctctccatggtgagaacatttaagatctgtcctag 387

                                                                       
Query: 188 tgacttccaagtaacattagcattaaattgaattgttacactgtccgaaagaacatgcaa 247
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tgacttccaagtaacattaccattaaattgaattgttacactgtccgaaagaacatgcaa 447

                                                                       
Query: 248 aagaagaaatgggagcccagaagccaaaaaaa-cctccacccaatgacacataggccggt 306
           |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 448 aagaagaaatgggagcccagaagccaaaaaaaacctccacccaatgacacacaggccggt 507

                           
Query: 307 gtgagatgcagccaga 322
           ||||||||||||||||
Sbjct: 508 gtgagatgcagccaga 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 723
Length adjustment: 9
Effective length of query: 313
Effective length of database: 714
Effective search space:   223482
Effective search space used:   223482
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)