BAC Information

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BAC

Clone NameMSMg01-331E20
Chromosome7 (Build37)
Map Location 52,025,167 - 52,025,510
singlet/doubletsinglet
Overlap geneVrk3
Upstream geneKlk12, Klk11, Klk10, Klk9, Klk8, Klk7, Klk6, Klk5, Klk4, Klk2-ps, Klk15, Klk1b7-ps, Klk1b8, Klk1b1, Klk1b9, Klk1b10-ps, Klk1b11, LOC100039713, Klk1b26, Klk1b18-ps, Klk1b27, Klk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16, Klk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854, EG638453, Clec11a, Shank1, 1700008O03Rik, Syt3, Lrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3, Myh14, 1700023D19Rik, Zfp473
Downstream geneEG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1, Med25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1, Bcl2l12, Irf3, AI480556, Rras, Prr12, Prrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2, Gys1, Ftl1, Bax, Dhdh, Nucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331E20.T7 (MSMg01no331_e20.b1)MSMg01-331E20.TJ (MSMg01no331_e20.g1)
ACCAG447631AG447632
length777745
length of high quality
(start - end)		475 (43 - 517)344 (70 - 413)
definitionCHROMAT_FILE: MSMg01no331_e20.b1 PHD_FILE: MSMg01no331_e20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:11 2005CHROMAT_FILE: MSMg01no331_e20.g1 PHD_FILE: MSMg01no331_e20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCANGACTCCGCGGAATTC
CCCTGTATTTGCACAAAAAAGAAATCATGGAAAAGGATAATGTGAACAGA
CTGAAGAGCAGTGAATAGGGTAAGCCAATCAATGGGTCTGTTACAGCCTG
GGAGTCCTTTACTTTCTTTATTACCTAAGTCATGGCCTGTGATAGTAATT
GATTTATTTTTTTTTTTTACTATCTTCTTGCAAGTGCAGGATAGGGAAAT
GTATGTATTCACAGTACCTTCCCATAATAATGCTCAGCCTATAAAAAGAT
ATCAGTGGAAAGTTTTTCCACAAGGAATGTTACATATTCCTATGTCAATA
TTTTATGTAACAACTTCTAGAAATAATTTGTAGGCAATTTCCTCAACCCA
TTATTTATCATTACCCGCCACAATATTTTGTTGGCTGATTATGTTGCAGA
TACTTTAAAGAAAATATTTATTTATTTATTTATTTATTTATTTATTTATT
TATTTATTTATTGGTTCCCCCAGTTCCCTTTTTTTTCTGCCTTCTTTGCC
TTGTCTTTGCATTTCTTTTTTTTTATCCTTTTGTCTTTCCACTTTTCCAT
ATCCCGTTTGCCCTTTGCCTCACTATATGTTTTTTTTTATTTCCTTTCCT
TTTATTTATTATCTTACCCCCTTCCCCTCCCTTTGTTTTTTTTTCCCCTC
TCTTTCCCCTTTTTCCTTTATTTTTCTCCATTTCTCTTATCCCCCCATCG
CTCTCCTATTTCTGCATGTGTCCTCTG

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTGCCATGCATTCCAGCAGGAGACAGTTTT
GGGCTCTGGGGCCGTGCCGCCCAGGGTCGGCTTCTGGCCCACTGTTCCGG
GTGCTGGGTGACCTTCACTTCTGTGAGCCATGTGAGCCCTGTTGTTCTCC
CACTGTAGACTGCTATGTAAGCAGCACCCTAGTCACAAGCATACACAATT
AGGAGTAAGCACGCTGTACTGGGTTTCATGCTCATTGCATGCAACACACC
ACAACTTATTCACAGGCTGTAGTCTGAGGGCCTACACCTCCAGTCAGTCA
CCCTGCCTCCATACCTCCAGGATTAGGAGGTAAAGACTCAGTGAGCCTTT
AGATCTTGGCAGCCCCCACCCGGCAGTTACACAGTTGTTAATGATAGAAG
GAAGCAGTGTGCTGGCGTTCAGCACCGAGGACAGCTACACACCCATGTTG
GTGCCTCCTAACTGCCATTCAGCACCTAGGATAGCGGCAGGAATTCCTCT
TTGGAAATCTAAGCACACAGATGACTTTGAAAGGAGGCTTCAGAACCAGG
GACTACTAGATGTTGGTCTTAGGGCTTGCTCTATTGTGAGAAAATGTGGC
ATCTGCTGGGTGCCTGGGGTGTTGCTTCAGCACCCAAGGACAGCAGAAAC
CAATCCTGGAGAAGCCCTGCAGGTCCAGGATGGCCTTCACAGGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_e20.g1 MSMg01no331_e20.g1 CHROMAT_FILE:
MSMg01no331_e20.g1 PHD_FILE: MSMg01no331_e20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:11 2005
         (344 letters)



>mm_chr7_52024967_52025711
          Length = 745

 Score =  627 bits (324), Expect = 0.0
 Identities = 339/344 (98%), Gaps = 1/344 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgccatgcattccagcaggagacagttttgggctctggggccgtgccgcccagggtcg 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 tctgccatgcattccagcaggagacagttttgagctctggggccgtgccgcccagggtcg 260

                                                                       
Query: 61  gcttctggcccactgttccgggtgctgggtgaccttcacttctgtgagccatgtgagccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcttctggcccactgttccgggtgctgggtgaccttcacttctgtgagccatgtgagccc 320

                                                                       
Query: 121 tgttgttctcccactgtagactgctatgtaagcagcaccctagtcacaagcatacacaat 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 tgttgttctcccactgtagactgctatgtaagcagcacccgagtcacaagcatacacaat 380

                                                                       
Query: 181 tagg-agtaagcacgctgtactgggtttcatgctcattgcatgcaacacaccacaactta 239
           |||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 381 tagggagtaagcacgctgtacagggtttaatgctcattgcatgcaacacaccacaactta 440

                                                                       
Query: 240 ttcacaggctgtagtctgagggcctacacctccagtcagtcaccctgcctccatacctcc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcacaggctgtagtctgagggcctacacctccagtcagtcaccctgcctccatacctcc 500

                                                       
Query: 300 aggattaggaggtaaagactcagtgagcctttagatcttggcag 343
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggattaggaggtaaagactcagtgagcctttagatcttggcag 544


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 745
Length adjustment: 9
Effective length of query: 335
Effective length of database: 736
Effective search space:   246560
Effective search space used:   246560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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