Query= MSMg01no331_p13.b1 MSMg01no331_p13.b1 CHROMAT_FILE:
MSMg01no331_p13.b1 PHD_FILE: MSMg01no331_p13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:58 2005
(706 letters)
>mm_chr7_100303065_100304167
Length = 1103
Score = 1147 bits (593), Expect = 0.0
Identities = 670/702 (95%), Gaps = 13/702 (1%)
Strand = Plus / Plus
Query: 6 gaattccagaacagtttcgctacagagtgagacacttaaaaa-aatggtattgctacaaa 64
||||||||||||||||| ||||||||||||||||||| |||| ||||||||||| |||||
Sbjct: 206 gaattccagaacagtttggctacagagtgagacactttaaaagaatggtattgccacaaa 265
Query: 65 agaaagcagaaagtgtaacaaaaattaataaaggaactgaattctacttctagaaataag 124
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct: 266 agaaagcagaacgtgtaacaaaaattaataaaggaactaaattctacttctagaaatagg 325
Query: 125 aagaactgtctaaaagagatactaaaatagattaaaaaaatcaaagatgtaaaagattga 184
||||||||||| |||||||| |||||||||||||||||| ||||| |||||||||||||
Sbjct: 326 aagaactgtctgaaagagatgctaaaatagattaaaaaac-caaagctgtaaaagattga 384
Query: 185 agagtaaaagaaaccaagacacaagaggataattctggtagtttcgaaacaaaatcaaag 244
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 385 agagtaaaagaaaccaagacacaagaggataattctggtagtttcaaaacaaaatcaaag 444
Query: 245 taaatttgatctagaaattgataaacatttcctgaaagtaagacttttggttgacagaca 304
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 taaat---atctagaaattgataaacatttcctgaaagtaagacttttggttgacagaca 501
Query: 305 aagaaagaaacaatgatttgtgggacagagctggggaaaggaggctgagaagtggagata 364
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 502 aagaaagaaacaatgatttgtgggacagagctggggaaaggaggctgagaaatggagata 561
Query: 365 agaaactccagtataacccaacagatgacaataataaaatagggcggggacaatttacca 424
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 562 agaaactccagtataacccaacagatgacaataataaaatagggtggagacaatttacca 621
Query: 425 aaaaataatggctgatcattttcaaaagttaaatacagactgtataaaatgagaagatat 484
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 aaaaataatggctcatcattttcaaaagttaaatacagactgtataaaatgagaagatat 681
Query: 485 atggatctgatgaggatacataaatgactagatggatggatagatagataaatttatatc 544
|||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 682 atggatctgatgaggatacata--------gatggatggatagatagataaatttatatc 733
Query: 545 atgaataaatttatgtatctatgatctaactatctacataatagataacagatatacaga 604
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 734 atgcataaatttatgtatctatgatctaactatctacatactagataacagatatacaga 793
Query: 605 tatcacatataaataaattagtatattcatgtgtgtgtgtgtgcaaagacagtcagaaag 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 tatcacatataaataaattagtatattcatgtgtgtgtgtgtgcaaagacagtcagaaag 853
Query: 665 gtaaaagttgggtttgttgtgactcctanataaccatctgaa 706
||||||||||||||||||||||||| || |||||||||||||
Sbjct: 854 gtaaaagttgggtttgttgtgactcataaataaccatctgaa 895
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 706
Length of database: 1103
Length adjustment: 10
Effective length of query: 696
Effective length of database: 1093
Effective search space: 760728
Effective search space used: 760728
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no331_p13.g1 MSMg01no331_p13.g1 CHROMAT_FILE:
MSMg01no331_p13.g1 PHD_FILE: MSMg01no331_p13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:58 2005
(624 letters)
>mm_chr7_100471790_100472813
Length = 1024
Score = 928 bits (480), Expect = 0.0
Identities = 517/540 (95%), Gaps = 17/540 (3%)
Strand = Plus / Minus
Query: 102 acctgcttggggaatggtgccacccatggtgggctggagcccctctatatcaattaataa 161
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1024 acctgcttggggaatgatgccacccatggtgggctggagcccctctatatcaattaataa 965
Query: 162 tcaaaacaatcccccatagacatgtacatataatagat-----------------ataag 204
|||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 964 tcaaaacaatcccccatagacatgtacatataatagatataagataatctggacaataag 905
Query: 205 ataatctggacaatccttcagttgagaatcccttctcaggatactgtagcctgtgtctag 264
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 904 ataatctggacaatccttcagttgagaatcccttctcaggagactgtagactgtgtctag 845
Query: 265 ttgacaattaaagctaactataacatacacttactatccataactgatgttaagattctt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 ttgacaattaaagctaactataacatacacttactatccataactgatgttaagattctt 785
Query: 325 agtgaaaatacaggtccacacaggagcagtgctttgcctaagaaccaaggtatgctgtga 384
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 784 agtgaaaatacaggtccagagaggagcagtgctttgcctaagaaccaaggtatgctgtga 725
Query: 385 agcacctggcatgctatgacaagtttcccatgtcacagtacaatggagctccagatggaa 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 agcacctggcatgctatgacaagtttcccatgtcacagtacaatggagctccagatggaa 665
Query: 445 tcaccagctaggcctcctggagctctttcctataaatctgacatgatgagggaatcatta 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 tcaccagctaggcctcctggagctctttcctataaatctgacatgatgagggaatcatta 605
Query: 505 gccagagagaaacagcaggattattaacttcagctgcacctcagacagcactgcgcagag 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 gccagagagaaacagcaggattattaacttcagctgcacctcagacagcactgcgcagag 545
Query: 565 aatccttgccaaatagcctgaagctgatgtttctttgacaagtgcaggcagggaccagtt 624
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 544 aatccttgccaaatagcctgaagctgatgtttctttgacaagtgcaggtagggaccagtt 485
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space: 622596
Effective search space used: 622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
