BAC Information

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BAC

Clone NameMSMg01-332P01
Chromosome7 (Build37)
Map Location 73,319,585 - 73,320,334
singlet/doubletsinglet
Overlap genenone
Upstream geneTjp1, Gm1693, EG665234, Tarsl2, Tm2d3, LOC665241, Pcsk6, Snrpa1, H47, Chsy1
Downstream geneLrrk1, Aldh1a3, Asb7, Lins2, Lass3, Adamts17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332P01.T7 (MSMg01no332_p01.b1)MSMg01-332P01.TJ (MSMg01no332_p01.g1)
ACCAG448833AG448834
length1,2681,262
length of high quality
(start - end)
---750 (92 - 841)
definitionCHROMAT_FILE: MSMg01no332_p01.b1 PHD_FILE: MSMg01no332_p01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:56 2005CHROMAT_FILE: MSMg01no332_p01.g1 PHD_FILE: MSMg01no332_p01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCCGGCTCTTGNNNATTCATTGGGCGCATAGACTCCTATGGGAGAGGA
TCCGCGGAATTCGCCAAGTTGGNTGCTCAATCAAATCCCGNNNTCTAANC
CTTGGGAGTGACAGACACATTAAAACCACCGCNCCCGGGCCNNACNGGGG
GGCNGGGGANCGGAACNCGGGNNCNCAGGCNNNNGAGGAGGAAANCGGAG
CCAGGNCCCCAGCCCCAGGNNNGGNNNANNCACNCAGNNAAGNCCAAGGG
GGANANGNGNCNCNCCNAGNANCANANNGCCGGCNNANGGGAGCCNNACG
GNAAGNNGGGAAANCAGGAAANAGAAACCNNNNCCCAGAAGGCNNNGACN
ANNCNAGGNNCNNCAAGGCNNCCANACAAANNGGAGAANCGGAAANAANN
NNANGAGGGGGAAAAGGNCCAAAGGGGANNANAGNNGAACGGAAACGGAC
NCGGCGCANAAAGCCAGGGCAANGGGCACCNNCACAGGANNGGGNCNCNA
ANCCAGGAGCANCGGAGGNCNCNCGGGCNACACAGAACNNAANNNNCNGG
GCAGGGCNNNNNCNAGAGNNCAGAGCNAACNCANCNNNNNGNGAANNNNA
NNNCNAAGCACAGGACNNNGGGGNNNGGNNGGGNAGCCAGNNNNCCCCCA
CNANAACAAAANACCCAACCNAACNAACNNNAAAGAGAANAAGGNNANNN
NAGCNCANCGCNNNGGNNCAGGACACANNCACNCCACGGCNNNGAAGCNG
NGAGCANCCCAAAGAANCCAGCCCAGGGANGGNGAGGGAGCAGAGAAAGA
AAGAGGAGCGACCAAGGGCCCCGAGACCCCAAGGCGAGGCCCCCCACNAA
GGGAGGAANCCCCAGAAGGCCCACCCGCGAGAGGGGCCGGCCGCCAACAA
GAAGGCCCCCCGGCGAAGAAAGGCCCAAAACCCGGGCCNCCGAGGAAAAA
AAAGGGCCAAACAAAAACCGGCCAGGGGGAGAAGGAAACACCAAAAAAAC
CCCCCCAAGAAAGAGGCCCAAAGGGGGCCACCCCGGGAAGGGCGGGGGGA
GGGCCCCCCCGCCCCGGCCCNNAACCNANCCCCAAAAAAAAAAAAAGGAA
GGGGGACCCCCCCCCCAAAAACAGGGGGGGGGCCNGNNCCGCCCNAACCC
CGGCCCCCCCCCCGGGGCCACCGGAGACAAAAACACCACACCCCCCCCAC
AAAACAGAAAAGACCCCCCCCCCCCCCGCACCCGGAAAAGGNACCCCCCC
GAAAAACACGCAGAGGGG
NCCGTCTCTTTNNNAAACGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTAAGTGTCTCAGGCCCTC
AATGTGCACACTGCCTGGTCCCTTACTCAGGACACCCCCTATAGACACAC
AGTAGGCTCTGCCATGCTGAAACACCCCATTATCTACACAGACATCGCCT
TAGATCCTCCCACCCTGAGTGGATGTGACTGGTTGAACTTGATCCTGCCC
TCAGGCCACTTCCCCCTCATCAGAGCTCCTGGAAGTTGCACCTGGGCTTC
TTGGTGTTCCTGGTTCCCTGGTGTGTTGGGAACAATGCTGCCTAGGCTTC
CCAGCGGGATTCCCACCAAATCCCGTAGTCATTGCATGTGCTGAAGTCTG
CCACCCTAACTGTGGACCAATACTGCCCTCGAGCCCCAGAAAAGCTTTCA
GTTGATGCCACTGTTTCTCACTTGCCAATACTTTGTTCTGCCTGGGTTGC
TTTGAGACAAGATCTCACTATATGACTGACTTGAAACTCACTCTGTAGAC
CAGGCTGGCCTCAAATCAGAGATCACCTGCATCTGCCTCCTGAGAGCTGG
GATTAAAGGCATGTGCCCGCAAGCCTAGCTGTGTTATCTTATTTTTAATA
AAATGTATTAAGGAATTAGAATGGCCCATATATTCTCAGCACACTTTAAA
AATTTTGGTAATATTTTTTTAGATTAAGAATGTGTGTATTTAAGGCCCAG
GGAATAGGTTATTGTGCAGAAGGGCATGCCGATGGAAGCTTCTCTTTCCA
ACCATCCTCCTAGCTCAAGACTTCCCATAGTGGACCACCAGATTTGTATG
CATCTTGGTGAAGAAAGTGGGTGCATGTGTGTATGCAATGGAACAAAGAG
TGTATCCTATAACAGAGACCCTGGCAGGAATATCTTTGGGTTCTTGGGAT
GTTTCAGGGCAGAGTTTTCTGGCCCTCTGCTACCTGGGAAACATTTGGGC
TTGACAGGCTTGCCAGATGTGAAAGCCATGGTTGGAAGGAATCACCCCCC
ACAAAGGTGGGACGGTGAAGGCTCCCAAAAACCCCTGGGGGCGGGTTGTG
AAACGGGGCATTCTTCCTTTTCTAAGAAAAAAAATTTTTGTTTGTCCTCC
TAATCCTCTGCACTGGATAAAAAGTGTTTCGTGCCTTTTAATCCAAATCA
ACCCGTGAATGTTCTGGTTCTCAATATAGAGAAGGTGCTCTTTTGCCACT
ACTCTCCCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_p01.g1 MSMg01no332_p01.g1 CHROMAT_FILE:
MSMg01no332_p01.g1 PHD_FILE: MSMg01no332_p01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:56 2005
         (750 letters)



>mm_chr7_73319385_73320534
          Length = 1150

 Score = 1400 bits (724), Expect = 0.0
 Identities = 744/752 (98%), Gaps = 4/752 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggccctcaatgtgcacactgcctggt--cccttactcaggacaccccctatagacaca 58
           ||||||||||||||||||||||||||||  ||  ||||||||||||| ||||||||||||
Sbjct: 201 caggccctcaatgtgcacactgcctggtgacc--tactcaggacacctcctatagacaca 258

                                                                       
Query: 59  cagtaggctctgccatgctgaaacaccccattatctacacagacatcgccttagatcctc 118
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 259 cagtaggctctgccatgctgaaacaccccagtatctacacagacatcgccttagatcctc 318

                                                                       
Query: 119 ccaccctgagtggatgtgactggttgaacttgatcctgccctcaggccacttccccctca 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ccaccctgagtggatgtgactggttgaacttgatcctgccctcaggccacttccccctca 378

                                                                       
Query: 179 tcagagctcctggaagttgcacctgggcttcttggtgttcctggttccctggtgtgttgg 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tcagagctcctggaagttgcacctgggcttcttggtgttcctggttccctggtgtgttgg 438

                                                                       
Query: 239 gaacaatgctgcctaggcttcccagcgggattcccaccaaatcccgtagtcattgcatgt 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gaacaatgctgcctaggcttcccagcgggattcccaccaaatcccgtagtcattgcatgt 498

                                                                       
Query: 299 gctgaagtctgccaccctaactgtggaccaatactgccctcgagccccagaaaagctttc 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gctgaagtctgccaccctaactgtggaccaatactgccctcgagccccagaaaagctttc 558

                                                                       
Query: 359 agttgatgccactgtttctcacttgccaatactttgttctgcctgggttgctttgagaca 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 agttgatgccactgtttctcacttgccaatactttgttctgcctgggttgctttgagaca 618

                                                                       
Query: 419 agatctcactatatgactgacttgaaactcactctgtagaccaggctggcctcaaatcag 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 agatctcactatatgactgacttgaaactcactctgtagaccaggctggcctcaaatcag 678

                                                                       
Query: 479 agatcacctgcatctgcctcctgagagctgggattaaaggcatgtgcccgcaagcctagc 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 agatcacctgcatctgcctcctgagagctgggattaaaggcatgtgcccgcaagcctagc 738

                                                                       
Query: 539 tgtgttatcttatttttaataaaatgtattaaggaattagaatggcccatatattctcag 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 tgtgttatcttatttttaataaaatgtattaaggaattagaatggcccatatattctcag 798

                                                                       
Query: 599 cacactttaaaaattttggtaatatttttttagattaagaatgtgtgtatttaaggccca 658
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 cacactttaaaatttttggtaatatttttttagattaagaatgtgtgtatttaaggccca 858

                                                                       
Query: 659 gggaataggttattgtgcagaagggcatgccgatggaagcttctctttccaaccatcctc 718
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 gggaataggttattgtgcagaagggcatgccgatggaagcttctctttccaaccatcctc 918

                                           
Query: 719 ctagctcaagacttcccatagtggaccaccag 750
           ||||| ||||||||||||||||||||||||||
Sbjct: 919 ctagcccaagacttcccatagtggaccaccag 950


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 750
Length of database: 1150
Length adjustment: 10
Effective length of query: 740
Effective length of database: 1140
Effective search space:   843600
Effective search space used:   843600
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)