BAC Information

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BAC

Clone NameMSMg01-332P10
Chromosome7 (Build37)
Map Location 132,244,739 - 132,245,403
singlet/doubletsinglet
Overlap genenone
Upstream geneEG628779, EG545999
Downstream geneLOC670828, 4933440M02Rik, LOC100043014, Jmjd5, Nsmce1, EG244214, Il4ra, Il21r, Gtf3c1, D430042O09Rik, Gsg1l, Xpo6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332P10.T7 (MSMg01no332_p10.b1)MSMg01-332P10.TJ (MSMg01no332_p10.g1)
ACCAG448849AG448850
length1,2601,289
length of high quality
(start - end)		608 (94 - 701)659 (87 - 745)
definitionCHROMAT_FILE: MSMg01no332_p10.b1 PHD_FILE: MSMg01no332_p10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:59 2005CHROMAT_FILE: MSMg01no332_p10.g1 PHD_FILE: MSMg01no332_p10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGGCTGATCTCTGNNAAACAGTGGGCGCTAAGACTACTAAGGGAGAGG
ATCCGCGGAATTCCTTCCCTGACTTTCTTCCTACTAAACTCGTTACTGGG
AAATGCAATCTGAAATAAACTCTTTCCTCTCCTAAGGTGCCTGCCGTGAA
TTCCTTCTCTGACTTTCTTCATTCATGACTTGTTACTGGGAAATGCAATC
TGAAATAAACTCTTTCCTCTCCTAAGGTGCTTTTGCTAATGATGTTTATC
ACAGCAACAGAAAGCAAATAGAAGAGAGGATTAGAGGATTTACAGAAAAG
CTTAATTCAGGAGGGAGGGTCCATTCTGAATGAGAATGGCACCATGCCGT
GGGCTGGGGTCCCATACATTGAATATGTGTCAGAAATTATCAAAGAAAAA
TAGTCTTAAAAATTAAAAACAATAAAAAAGAAGAAACAAAACAAGATTAA
AAAAACCAAGAAAGTAGAGCACCATCATGCACGTCTCTCTGCTTCCTGAC
TGTGTGCATAGTGTGCACAGTGTGTGCAACTGCTTCTGCTCTCATGCCCT
CCCTGACATGGTGGGCTATGCCCCTTAATCAACTGTGAGTCAAAACAAAC
CCCTCCTTCCTCAAGCTGTTCTCATCTGCTGTCATGGCAAGAGGACAAAT
GGCCAATAACCCATTCTACTTTTCTCCAATGGCCTTCCATTGTATCTTAC
TGTGTGTCTTGGACAGTGTTAGGCTCAAAGATTTCATCATGAACTCAGGG
AGCCACTGAAATGTGGTGCCTATGGGTTTCTAGACTATGCTATGATTGTG
TGAAGNTGAGTGAGNCATGAACTCTACCTTCTGTAGCATACATACACTGC
ATCCAATGCTGTACAGACAGATAGACCAGGNCTAGNATGTCTACCTCCTT
TTTATCTGTTAAGGGAAAAACTCATGAAATACATGCTTTGTTGAAGCCGA
CAAACCCTAAATTTTGGGAGGCCTCGTTTTTATTTTTAAAAAGGGACTTT
TCATTGAGTTTATTTAGAAAAGGAAAAAGTTAAACAAATTTTTATTGGGC
TTTTTTTTGTGAGGGCGCCCGACCCAGCACCTTTTAAAGGGAAAATTAAT
TGGGAGGTTAAATTTAAGNCTGCCCTATCTTTCCCAAAAGGAATTTTTCA
AAAAGGTGTAAAAGAGGAGAATATTTTTTCAGGCCNAAAAAATTTTCCCN
ATTGAAAGTTTCTAGGGTTTTTATTTTAANACTTTANTNTTCTAATCTTA
TAAAACTATT

CCGGTTCTTNNNNNAAAGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTATAGATAATAAGTCGTAGT
TCTTATATATTTTTAATGATCTATTTGGCAAAATTAAAAATCAGTAACCT
TCTAGGTATGCTCTCTCTCTCTTTCTCTTTGGTTTAATTTAAATAGTCAT
GGTAGAACAATAGCCAGTGGGCACTGGATGCTAACCAGACACTGCCCTGT
CACTTGTGAGATATCACGCTAGCTAGTTCACACTTTCTGGTAGGCACATT
GATATCAGAGGTGATGCTCAAAGTCAGGGAGGGCAACTTGGTTAGCTGCT
ACCAGTTTATTTGCTCATTTCCATTGTATATCCACTCAGCTACCATCTTC
TGGGATGGAGACAACACAGCAAGCCAGGTTGACAAGGTCTCTGTTTCTCT
AAAACTTAGAGAATAGCAGCAAAGACACAACCTGATCTTCTGGGCTCAGA
GCTTGAATAGGACCAGTGCTGCTCTGTGACATGCTGTGGTGGGCCTCTTA
CTGAAAGGATCAGACGAGTGTTGATGGGTGGGTGTGTCAGTGAGAAGAAA
AATGGGTAGTTTTTTTTCCCCCTTTCAGTTCCCTTTTAAAATATCCTGTT
TCCTTCTGAAGACTCTCCCCACCTTCTCCTTATGTAACTGGCCTCACAAA
GATCTCATATCTGTAGCAGAGTGTCTCTCAGCTATCCACATAAAAACTTG
GCCAGATAGCAGAAAAGCCAGACAAAGTTGCTAAGTCTCCTGATTTAGAG
AAAACGGGGTCCTTTAATCACATACCTGAAGGAGGTGGAAGAGAACATAA
TTTTCCCCCAGTCTGTTATCTCATGGCAATTTTCTCAGATGATTTGATTA
AGCTCCAGTCCCACTATTGAATAGGACTTTGTAGACTTGACACAAGAAGC
CAGCTCATGAACAAAACTCTTATGCTTTGAACTAACTGGATGCATTACCA
TAATTTAAAGGGGGGGAATTCTAAAAGGCGAAACCCCGCTTCATAAACCG
CAGGGCATTCATATAATTTTTACCCTTCCCCAAAAATTTCCCATGTACCC
TAAAAGCCCCAAAGCTTGATTTAGAGCCCTCCTTTTCCCACATTTCAGGG
GTTTTGTGCTTCTCCGTCTCTTTTTCTCAAAAAAAGTATATTCTCCTCTG
GTTTCTCACATTGAGGCTCTTACTGCAAGTATGAGTACCTCCTTCTAAGA
GGGTGGTCAATTCTTGACGATCATATCCTTTCCTTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_p10.g1 MSMg01no332_p10.g1 CHROMAT_FILE:
MSMg01no332_p10.g1 PHD_FILE: MSMg01no332_p10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:59 2005
         (659 letters)



>mm_chr7_132244550_132245605
          Length = 1056

 Score = 1151 bits (595), Expect = 0.0
 Identities = 645/669 (96%), Gaps = 16/669 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   taataagtcgtagttcttatatatttttaatgatctatttggcaaaattaaaaatcagta 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 190 taataagtcgtagttcttatatatttttaatgatctattcggcaaaattaaaaatcagta 249

                                                                       
Query: 61  accttctaggtatgctctctctctctttctctttggtttaatttaaatagtcatggtaga 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 250 accttctaggtatgctctctctctttttctctttggtttaatttaaatagtcaaggtaga 309

                                                                       
Query: 121 acaatagccagtgggcactggatgctaaccagacactgccctgtcacttgtgagatatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 acaatagccagtgggcactggatgctaaccagacactgccctgtcacttgtgagatatca 369

                                                                       
Query: 181 cgctagctagttcacactttctggtaggcacattgatatcagaggtgatgctcaaagtca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 cgctagctagttcacactttctggtaggcacattgatatcagaggtgatgctcaaagtca 429

                                                                       
Query: 241 gggagggcaacttggttagctgctaccagtttatttgctcatttccattgtatatccact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gggagggcaacttggttagctgctaccagtttatttgctcatttccattgtatatccact 489

                                                                       
Query: 301 cagctaccatcttctgggatggagacaacacagcaagccaggttgacaaggtctctgttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 cagctaccatcttctgggatggagacaacacagcaagccaggttgacaaggtctctgttt 549

                                                                       
Query: 361 ctctaaaacttagagaatagcagcaaagacacaacctgatcttctgggctcagagcttga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ctctaaaacttagagaatagcagcaaagacacaacctgatcttctgggctcagagcttga 609

                                                                       
Query: 421 ataggaccagtgctgctctgtgacatgctgtggtgggcctcttactgaaaggatcagacg 480
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct: 610 ataggaccagtgctgctctgtgacatgctgtgatgggcctcttactgaaaggatcagaca 669

                                                                       
Query: 481 agtgttgatgggtgggtgtgtcagt-----------gagaagaaaaa-tgggtagttttt 528
           |||||||||||||||||||||||||           ||||||||||| ||| | ||||||
Sbjct: 670 agtgttgatgggtgggtgtgtcagttagtggtcagtgagaagaaaaactgg-t-gttttt 727

                                                                       
Query: 529 tttccccctttcagttcccttttaaaatatcctgtttccttctgaagactctccccacct 588
           ||||||  ||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 728 tttccc--tttcagttctcttttaaaatatcccgtttccttctgaagactctccccacct 785

                                                                       
Query: 589 tctccttatgtaactggcctcacaaagatctcatatctgtagcagagtgtctctcagcta 648
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 786 tctccttatgtaactggcctcacaaagacctcatatctgtagcagagtgtctctcagcta 845

                    
Query: 649 tccacataa 657
           |||||||||
Sbjct: 846 tccacataa 854


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1056
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1046
Effective search space:   678854
Effective search space used:   678854
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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