Query= MSMg01no333_a09.b1 MSMg01no333_a09.b1 CHROMAT_FILE:
MSMg01no333_a09.b1 PHD_FILE: MSMg01no333_a09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:06 2005
(657 letters)
>mm_chr7_36523207_36524264
Length = 1058
Score = 1172 bits (606), Expect = 0.0
Identities = 645/658 (98%), Gaps = 1/658 (0%)
Strand = Plus / Plus
Query: 1 cactgatctatttattgatttatcaggttgttgtttttgagacaggctcttaaagagttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cactgatctatttattgatttatcaggttgttgtttttgagacaggctcttaaagagttc 260
Query: 61 aggctggtttcaatctcgatgtaattgaagatgcccttaaactctgatcccagtgccgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggctggtttcaatctcgatgtaattgaagatgcccttaaactctgatcccagtgccgag 320
Query: 121 atcacgggtgggcaccacaacatggtttattggaaactgaggataaacccagggcttcct 180
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 321 atcacgggtgggcaccacaacatggttttttggaaactggggataaacccagggcttcct 380
Query: 181 atatgctatctatgcaagcaactctatcaactgagacctgtcccagaccaacttactagt 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatgttatctatgcaagcaactctatcaactgagacctgtcccagaccaacttactagt 440
Query: 241 tttgaaatagactcacatttatagatatgttttgatctagctataaaagagaatccagga 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttgaaatagacacacatttatagatatgttttgatctagctataaaagagaatccagga 500
Query: 301 tgtctccat-gccttggtctttttctccttccccttcatgtgttatgtaaccacatcatc 359
||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 501 tgtctccattgccttggtctttttctccttccccttcatgtgttatgtaatcacatcatt 560
Query: 360 ccttggtcattacattatacaacccaacattatacatggaagcctgtgttatatatctaa 419
||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 561 ccttggtcattgcattatacaacccaacattacacatggaagcccgtgttatatatctaa 620
Query: 420 tacagtttatgctatggcattaggtatccttgggcctatagtaaataatgtgagttacac 479
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tacagtttatgctgtggcattaggtatccttgggcctatagtaaataatgtgagttacac 680
Query: 480 tgacagcatttctgacatttagaaaattctattctggtctagttttttagttagttagct 539
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 681 tgacagcatttctgacatttagaaaattctattctagtctagttttttagttagttagct 740
Query: 540 tgttttgtttttgagatgcagtctagctaaatagtcttggctggtttggaattcactatg 599
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 741 tgttttgtttttgagatgcagtctagctaaatagccttggctggtttggaattcactatg 800
Query: 600 tagaccagtctggcttctgttggctgcttctgccacctgagtactgaggttaaaggca 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tagaccagtctggcttctgttggctgcttctgccacctgagtactgaggttaaaggca 858
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1058
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1048
Effective search space: 678056
Effective search space used: 678056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no333_a09.g1 MSMg01no333_a09.g1 CHROMAT_FILE:
MSMg01no333_a09.g1 PHD_FILE: MSMg01no333_a09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:06 2005
(348 letters)
>mm_chr7_36694432_36695179
Length = 748
Score = 623 bits (322), Expect = 0.0
Identities = 343/354 (96%), Gaps = 7/354 (1%)
Strand = Plus / Minus
Query: 1 accataaaaccaaataaaccccaaatcaaaacaaa-------ggggggggcaaagattaa 53
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 589 accataaaaccgaataaaccccaaatcaaaacaaagtgggggggggggggcaaagattaa 530
Query: 54 aatctctggcacatcagctgctggcagtgggtggaactggtctgactcaggcacagaaag 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 aatctctggcacatcagctgctggcagtgggtggaactggtctgactcaggcacagaaag 470
Query: 114 aatgcaaaggatatgaggacaggcaagaaactttgaatattgactagatacttaaatatt 173
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 469 aatgcaaaggatatgaggacaggcaagacactttgaatattgactagatacttaaatatt 410
Query: 174 agggaaacttggcttacctcaaagagagccaaagccatgatgtgtatgctttttctctct 233
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 409 agggaaacttggcttacctcaaagagagccaaagccatgatgtgtacgctttttctctct 350
Query: 234 cggagatgtgttcttaattgttaatgaatataaaagtatctgaggatggcttcagatagt 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 cggagatgtgttcttaattgttaatgaatataaaagtatctgaggatggcttcagatagt 290
Query: 294 ccagagaacaggacagatgggacacagctactgtggatgggcagcgtggacagg 347
|||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 289 ccagagaacaggacagatgggacacagctactgtggataggcagcgtggacagg 236
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 748
Length adjustment: 9
Effective length of query: 339
Effective length of database: 739
Effective search space: 250521
Effective search space used: 250521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
