BAC Information

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BAC

Clone NameMSMg01-333F14
Chromosome7 (Build37)
Map Location 129,291,066 - 129,291,398
singlet/doubletsinglet
Overlap geneDctn5
Upstream geneOtoa, LOC668556, Hs3st2, Usp31, Scnn1g, Scnn1b, Cog7, Gga2, Ears2, Ubfd1, Ndufab1, Palb2
Downstream genePlk1, Ern2, 2010110P09Rik, Prkcb1, LOC668486, Cacng3, 4930413G21Rik, Rbbp6, LOC628696, LOC100042977, LOC100042981, Tnrc6a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-333F14.T7 (MSMg01no333_f14.b1)MSMg01-333F14.TJ (MSMg01no333_f14.g1)
ACCAG449129AG449130
length689712
length of high quality
(start - end)
548 (49 - 596)340 (74 - 413)
definitionCHROMAT_FILE: MSMg01no333_f14.b1 PHD_FILE: MSMg01no333_f14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:20:30 2005CHROMAT_FILE: MSMg01no333_f14.g1 PHD_FILE: MSMg01no333_f14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:20:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCACAGGTTCCGACCCGCGCGGAATTCAAACAATGACATGACTCCCTAA
AAATAAATTAAGCCTCCACAGTCCACGGGCCAATGTCATGAGCCTCCAAG
GCTGCTTCTTGATGCTCTTCAGAGCGACTTTTAAACCATGCTGTCTACCC
ACGGTAGAAACGCCATTTATGTCTGACCCAGTTCACCCGAGCTTGCATAG
GAACACACGAAATAAAAGATTCATGAAGCCATACTTACCCTTCCCAAGGC
TGAGGCATTCTGATAGTTTTTCCTATTCTGATTTTTCATAGTGTATCTGA
CTTACTAAATTGATGTTGTGGTCCTCCAGTGAGTGGTAAACCACAGCAGT
GAAAATCAAATGTAGAAGAGGAGCTGGGGAGATGAATCACCCCCAAAATG
CTTGTGCCCCCATAGTCTGTAAATCTCTCTATGCCTCTCTGTGTGTGCAT
GCATGCACGCGTGCGTGTGTGTGTGTGTGTGTGCATGTGCACATGTGTGT
GAGTGTGTGCATAGGTGTGCATGGGTGTGTGTGTGCATATGTCTGTGTTT
GTATGTGTATGTGTGTGCATGGGTGTGAGTGTGTGTATGCATGTGCATGC
ACATGAATGTGCGGCCGTGAGNGTGCGCGCGCGCACCCCACACNCAACAA
AAATTCAGANNNCNNACNNCCCCGGCGCCCCCGCGGGGG
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXAGAAAATCTTAACATGCTTGTTCCACCATGGACTGTTCT
GTTGTCTTCTTTTGATTCATCTGTACCCAGTATCACTGCTTTGGTGGATT
GAGTTTCACTGTAGGAATGGCAGGACAGTTCTTTCCTCAGGATAAGGATA
AGGCTCAGTGGGGCTCAGTGGGGATGAGAAGCCCTTGTGTGGAACAACCC
ACAGCAGTCAGGGATGCTCTTTGGATCTCTCTTTGGATCTTGTACGCAAG
TTCTGACCTCCTCCTTTTGTACTGAGAGCTGTAGTGTTTGGTTCCCAAAC
AAACTCAGACCTTTCCGAAGATGTATGTACCCAGCAACCACATGGCAGCT
CACAATTTCCCACACCCCCAATTCCAAGGCATCACAAGATGTATGTAGTC
AACAGTCTTGTCAGTCTGAAGGACCACAAAGTTAGATCCTCTATAGAGAG
TGCAAAAGTCTTTAGACTTTGCACAAATAGTAGGGTTACTGGCCTCCCTG
GCTTCCTTGCTTGACTGGGTCTCTCTTTTCTCAGGACTCTTCTCAGGGGA
GCTCCCAGAGTGCACACAGGAGCTGACGATTGACGTCACCAAAAGCTACT
ACCAGAAGTTTCTACCCCTAACACAAGTCTAAAGCCTCTGCTTCATATCT
TTAATTCCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no333_f14.g1 MSMg01no333_f14.g1 CHROMAT_FILE:
MSMg01no333_f14.g1 PHD_FILE: MSMg01no333_f14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:30 2005
         (340 letters)



>mm_chr7_129290866_129291599
          Length = 734

 Score =  567 bits (293), Expect = e-166
 Identities = 325/339 (95%), Gaps = 6/339 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgcttgttccaccatggactgttctgttgtcttcttttgattcatctgtacccagtat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgcttgttccaccatggactgttctgttgtcttcttttgattcatctgtacccagtat 260

                                                                       
Query: 61  cactgctttggtggattgagtttcactgtaggaatggcaggacagttctttcctcaggat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cactgctttggtggattgagtttcactgtaggaatggcaggacagttctttcctcaggat 320

                                                                       
Query: 121 aaggataaggctcagtggggctcagtggggatgagaagcccttgtgtggaacaacccaca 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagataaggctcagtggggctcagtggggatgagaagcccttgtgtggaacaacccaca 380

                                                                       
Query: 181 gcagtcagggatgctctttggatctctctttggatcttgtacgcaagttctgacctcctc 240
           |||||||| ||||| ||      |||||||||||||||||| ||||||||||||||||||
Sbjct: 381 gcagtcagagatgccct------ctctctttggatcttgtaagcaagttctgacctcctc 434

                                                                       
Query: 241 cttttgtactgagagctgtagtgtttggttcccaaacaaactcagacctttccgaagatg 300
           |   || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 cagctggactgagagctgtagtgtttggttcccaaacaaactcagacctttccgaagatg 494

                                                  
Query: 301 tatgtacccagcaaccacatggcagctcacaatttccca 339
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tatgtacccagcaaccacatggcagctcacaatttccca 533


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 734
Length adjustment: 9
Effective length of query: 331
Effective length of database: 725
Effective search space:   239975
Effective search space used:   239975
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)