BAC Information

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BAC

Clone NameMSMg01-334F06
Chromosome7 (Build37)
Map Location 16,939,512 - 17,118,833
singlet/doubletdoublet
Overlap geneSae1, BC057627, Tmem160, Npas1, LOC629352, Grlf1
Upstream geneObox2, LOC100042753, LOC100042756, LOC100042758, EG545921, LOC100042762, Obox1, LOC100042765, Obox3, LOC100042771, Obox5, EG638338, Obox6, Crx, Crxos1, Sepw1, Gltscr2, Ehd2, Gltscr1, Zfp541, Napa, Kptn, Slc8a2, Mrg2, Dhx34, Gpr77, C5ar1, 2610014I16Rik, Ccdc9, Bbc3
Downstream geneLOC670915, LOC100038912, Ceacam15, EG666641, LOC434127, Ceacam9, Ap2s1, Slc1a5, Fkrp, Strn4, Prkd2, Dact3, Gng8, Ptgir, Calm3, EG434128, 0710005I19Rik, LOC100042835, LOC434130, Ppp5c, Hif3a, Psg16, LOC100042844, LOC640145, Ceacam3, Psg29
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-334F06.T7 (MSMg01no334_f06.b1)MSMg01-334F06.TJ (MSMg01no334_f06.g1)
ACCAG449852AG449853
length728848
length of high quality
(start - end)		662 (45 - 706)171 (75 - 245)
definitionCHROMAT_FILE: MSMg01no334_f06.b1 PHD_FILE: MSMg01no334_f06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:43 2005CHROMAT_FILE: MSMg01no334_f06.g1 PHD_FILE: MSMg01no334_f06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,939,512 - 16,940,169)(17,118,665 - 17,118,833)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAATCCGCGGA
ATTCTTTGTTTTGCTCTGAGCCCCATTTTTAATGGGGTTATTTGATTTTC
TGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTA
TCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTTCAATGCC
TTTTTCTTAAGTTCACAGAAATGGGTCTTTTTAATTTCTTGCTTGGTTAC
AATAATCATTACTTTTTTTCTTTAATTAGTGAACAAAAGAGATTTATTTA
TGTATGAGTGTTTTGCCTGTACATAGTCTACTACAATACGTGTATGCCTA
GCACCCATGAAGATCAGAAGAGGGCTGGATAGCCTGGATCTGGAGTTATG
GATAGTTATGAGCCACTATGTGGGTGCTGAGAACTGAACCCCAACCCTCT
GTAAGAGGAACCAGTGCTCCTAACCACTGAGCTGCCACACCTCCAGCCCC
AACCAAAAACTCTCACCTACTGACCTCATTCTACTTCTCAGGGCAGCAGA
TGGCTTCCATGTGTGTCCTAGCTTTCTGCTAAGCATGCTTGCCATTGACT
GTGCTTGGAATCTTGAGTAACTCAAGAAGTTAATGTGCTGCTGAGTGGTG
GTGGCAGTCAACTTTAATTCCAATACTCATAATCTCCAAGTTCGAAGCTA
GCCTGGTCTACAGAGCACATTCCAGGAA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGTTACACACATAC
ACAGAAAACCTGTCTGGAAAAGCAAACAAAATAAGTCCTCCTACCTCATT
TTCATAAGTAACTGGAACTCTAAGCACTTGTTATGCCAGTAGTAATCCTT
TTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGNNNNTTT
TTTTTNTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTNTTT
TTTTNNTNNTTTCTTTTTTTTTTNCCCNNNCCCCTTTTTGTGTTCCCCTT
TATTCCCCTCTTTTTTCCCCCCCCCTTTTCCTCTCTCGTTTCGGACTCCT
TTTGCATTAAGGAGTAGACCCAATATCCCCCTATGGTCGATGTCTCAAAC
TATACTTTTTCCGCCCGCTCAGCCTCGCCTATCGCGGCCCCCCTCTCCCC
ATCACTTCGCGCAATCACACNTACATAATTCGTTCTTATTCCTGACCCTG
TCCCCGCAATACCACTGTGGCAGGAAATTTTTTATATCGGCCATCTCGCA
TCGCTCCTGTATGAGTACCGTTATCCCGTTCTACGCACTGCTCCCCCCAA
TTTGCGTTTTTTATCGTCTCTCCTACGCCCATGTTGTCGTCCTCTCTTCC
GTACAAGGCCGTTTCGGTTTTTTTACCCCCTACCACTCGTTAAATGTAAT
CTTTTCTAGCGCCGCGCCCATTTTATATCAGGGCAACTGCCCCCGTTCCT
CTTCCCTTTTCGTGGTTTGTAGTCCGCTTTCCCCCCCCTTTAGTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no334_f06.b1 MSMg01no334_f06.b1 CHROMAT_FILE:
MSMg01no334_f06.b1 PHD_FILE: MSMg01no334_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:43 2005
         (662 letters)



>mm_chr7_16939308_16940369
          Length = 1062

 Score = 1249 bits (646), Expect = 0.0
 Identities = 655/658 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttgttttgctctgagccccatttttaatggggttatttgattttctggagtcc 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttgtttagctctgagccccatttttaatggggttatttgattttctggagtcc 264

                                                                       
Query: 65  accttcttgagttctttatatatattggatattagtcccctatctgatttaggataggta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 accttcttgagttctttatatatattggatattagtcccctatctgatttaggataggta 324

                                                                       
Query: 125 aagatcctttcccaatctgttggttcaatgcctttttcttaagttcacagaaatgggtct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aagatcctttcccaatctgttggttcaatgcctttttcttaagttcacagaaatgggtct 384

                                                                       
Query: 185 ttttaatttcttgcttggttacaataatcattactttttttctttaattagtgaacaaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttttaatttcttgcttggttacaataatcattactttttttctttaattagtgaacaaaa 444

                                                                       
Query: 245 gagatttatttatgtatgagtgttttgcctgtacatagtctactacaatacgtgtatgcc 304
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 445 gagatttatttatgtatgagtgttttgcctgcacatagtctactacaatacgtgtatgcc 504

                                                                       
Query: 305 tagcacccatgaagatcagaagagggctggatagcctggatctggagttatggatagtta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tagcacccatgaagatcagaagagggctggatagcctggatctggagttatggatagtta 564

                                                                       
Query: 365 tgagccactatgtgggtgctgagaactgaaccccaaccctctgtaagaggaaccagtgct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgagccactatgtgggtgctgagaactgaaccccaaccctctgtaagaggaaccagtgct 624

                                                                       
Query: 425 cctaaccactgagctgccacacctccagccccaaccaaaaactctcacctactgacctca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cctaaccactgagctgccacacctccagccccaaccaaaaactctcacctactgacctca 684

                                                                       
Query: 485 ttctacttctcagggcagcagatggcttccatgtgtgtcctagctttctgctaagcatgc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttctacttctcagggcagcagatggcttccatgtgtgtcctagctttctgctaagcatgc 744

                                                                       
Query: 545 ttgccattgactgtgcttggaatcttgagtaactcaagaagttaatgtgctgctgagtgg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttgccattgactgtgcttggaatcttgagtaactcaagaagttaatgtgctgctgagtgg 804

                                                                     
Query: 605 tggtggcagtcaactttaattccaatactcataatctccaagttcgaagctagcctgg 662
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 805 tggtggcagtcaactttaattccaacactcataatctccaagttcgaagctagcctgg 862


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space:   685904
Effective search space used:   685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no334_f06.g1 MSMg01no334_f06.g1 CHROMAT_FILE:
MSMg01no334_f06.g1 PHD_FILE: MSMg01no334_f06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:43 2005
         (171 letters)



>mm_chr7_17118507_17119077
          Length = 571

 Score =  319 bits (165), Expect = 5e-92
 Identities = 168/169 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggacagccagggttacacacatacacagaaaacctgtctggaaaagcaaacaaaataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 caggacagccagggttacacacatacacagaaaacctgtctggaaaagcaaacaaaataa 268

                                                                       
Query: 61  gtcctcctacctcattttcataagtaactggaactctaagcacttgttatgccagtagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gtcctcctacctcattttcataagtaactggaactctaagcacttgttatgccagtagta 208

                                                            
Query: 121 atccttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 169
           || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 atgcttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 159


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 58
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 171
Length of database: 571
Length adjustment: 8
Effective length of query: 163
Effective length of database: 563
Effective search space:    91769
Effective search space used:    91769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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