Query= MSMg01no335_k13.b1 MSMg01no335_k13.b1 CHROMAT_FILE:
MSMg01no335_k13.b1 PHD_FILE: MSMg01no335_k13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:30 2005
(685 letters)
>mm_chr7_73249525_73250608
Length = 1084
Score = 971 bits (502), Expect = 0.0
Identities = 529/538 (98%), Gaps = 1/538 (0%)
Strand = Plus / Minus
Query: 148 ataaaaagtgagggccaacagcaaaacttctcttcatttatgtgggctgctaccagaagg 207
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1084 ataaaaagtgagggccagcagcaaaacttctcttcatttatgtgggctgctaccagaagg 1025
Query: 208 tgcagaccagatttagcttgggtcttcccacctcaaagtatccgatcaagacaggtgttc 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1024 tgcagaccagatttagcttgggtcttcccacctcaaagtatccgatcaagacaggtgttc 965
Query: 268 cccgattcttggtttccccgaatcttggtttccgttgattccagacttagtcaagttgac 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 964 cccgattcttggtttccccgaatcttggtttccgttgattccagacttagtcaagttgac 905
Query: 328 aaccaggattagccatcacaggcacctcatgggtccttggtctacttgtgagttctatat 387
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 904 aaccaggattagccatcacaggcacctcatgcatccttggtctacttgtgagttctatat 845
Query: 388 gcagtttttgtgaggcatgtttcttatacaggcaagcatgcaggtgcacacatgtatctc 447
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 gcagtttctgtgaggcatgtttcttatacaggcaagcatgcaggtgcacacatgtatctc 785
Query: 448 agagacagatagctagaagacacagcacagcactggcagccagccagatgaagtagaata 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 agagacagatagctagaagacacagcacagcactggcagccagccagatgaagtagaata 725
Query: 508 gccagatgagacagattaaccagtaagtggtgatgcacagacactcaggagatagtctaa 567
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 724 gccagatgaga-agattaaccagtaggtggtgatgcacagacactcaggagatagtctaa 666
Query: 568 atgtttttaggggacgccttcatgacaaggtttgctctagtcaaaggcttgatcctcctt 627
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 atgtctttaggggacgccttcatgacaaggtttgctctagtcaaaggcttgatcctcctt 606
Query: 628 tagcaaagaaagatctataactagacatcagttatatgccattactctaaagcgaggc 685
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 605 tagcaaagaaagatctataactaaacatcagttaaatgccattactctaaagcgaggc 548
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1084
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1074
Effective search space: 724950
Effective search space used: 724950
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no335_k13.g1 MSMg01no335_k13.g1 CHROMAT_FILE:
MSMg01no335_k13.g1 PHD_FILE: MSMg01no335_k13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:30 2005
(542 letters)
>mm_chr7_73222734_73223675
Length = 942
Score = 1017 bits (526), Expect = 0.0
Identities = 538/542 (99%)
Strand = Plus / Plus
Query: 1 actctgtagaccaggttggctttgaactcagaaatttgcctgcctctgcctcccaagtgc 60
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actctgtagatcaggttggccttgaactcagaaatttgcctgcctctgcctcccaagtgc 260
Query: 61 tgggattaaaggcatggttttggttttttaagacagggtttctctgtgtagccctggctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggattaaaggcatggttttggttttttaagacagggtttctctgtgtagccctggctg 320
Query: 121 gaactcaccctgtaaacagagctggcctctaactcagggatcagccatcctctgcctcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaactcaccctgtaaacagagctggcctctaactcagggatcagccatcctctgcctcct 380
Query: 181 gagtgctgagattaaaggagtgagccagcacctcctcttttaatgaaactaacccctctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagtgctgagattaaaggagtgagccagcacctcctcttttaatgaaactaacccctctt 440
Query: 241 aaccagtgtgctgggattaaaggcttttaaggcaaggtttctctgtgtagccctcactgt 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaccagtgtgcggggattaaaggcttttaaggcaaggtttctctgtgtagccctcactgt 500
Query: 301 cctgagcgtcaaattcagagactcacctgtgtctgcctgctgagtgctggggttgaaggt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctgagcgtcaaattcagagactcacctgtgtctgcctgctgagtgctggggttgaaggt 560
Query: 361 gtgtgccaacatttcccctccaccttgtcttttaatgaaactaaacattacttatttcat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgtgccaacatttcccctccaccttgtcttttaatgaaactaaacattacttatttcat 620
Query: 421 catcatgattgcagatgttaagggactggatcaacaggcaaatgagcaacctcctccctc 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 621 catcatgattgcagatgttaagggactggatcaacaggcaaatgagcaacctcctctctc 680
Query: 481 gtaaccagatgtttcacttgctctgtatgatgtgagaaatcaccttaagcaaagagagag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtaaccagatgtttcacttgctctgtatgatgtgagaaatcaccttaagcaaagagagag 740
Query: 541 gg 542
||
Sbjct: 741 gg 742
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space: 495824
Effective search space used: 495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
