Query= MSMg01no335_n24.b1 MSMg01no335_n24.b1 CHROMAT_FILE:
MSMg01no335_n24.b1 PHD_FILE: MSMg01no335_n24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:47 2005
(502 letters)
>mm_chr7_93544624_93545518
Length = 895
Score = 845 bits (437), Expect = 0.0
Identities = 484/503 (96%), Gaps = 9/503 (1%)
Strand = Plus / Plus
Query: 1 agagttctccatggacatattcatgttcactatatattatacttctacatatatctaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagttctccatggacatattcatgttcactatatattatacttctacatatatctaatt 260
Query: 61 taggaaaataataacttcacaaccagaataaaatagtcttatatcgttttttt-aagttt 119
||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 261 taggaaaataa---cttcacaaccagaataaaaaagtcttatatcgttttttttaagttt 317
Query: 120 atgaactttttatagtgaacacactgagtatatacctcttgtaacaatcaaagcagttgt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 atgaactttttatagtgaacacactgagtatatacctcttgtaacaatcaaagcagttgt 377
Query: 180 ataactgaaacaacgtcacttttgtgtctatctgcaggttcttatctcaaacccttttgg 239
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 378 ataactgaaacaatgtcacttttgtgtctatctgcaagttcttatctcaaacccttttgg 437
Query: 240 aggtttaagttacaaaactcgattaaaacactatatgcatgcttcgtgctgtatgcttat 299
|||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 438 aggtttaagttataaaactcgattaaaacactatatgcatgcttcatgctttatgcttat 497
Query: 300 tactctgattttgttacttatgtagaggagaatctttatgagaagatttttttttcagac 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 498 tactctgattttgttacttatgtagaggagaatctttatgagaagatttttttt-cagac 556
Query: 360 ctgaagagccaagtagtgttatgttggtaatattttatatggtcctatttgaacctgtaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ctgaagagccaagtagtgttatgttggtaatattttatatggtcctatttgaacctgtaa 616
Query: 420 ataaatactgattgctaaggaaaaatgctgaagcgtttccctcagtactataagaaaaat 479
||| |||||||||||||||||||| ||||||| |||||||||| ||||||||||| |
Sbjct: 617 ata----ctgattgctaaggaaaaatgttgaagcggttccctcagttctataagaaaatt 672
Query: 480 tgacttttagggctatagattcc 502
|||||||||||||||||||||||
Sbjct: 673 tgacttttagggctatagattcc 695
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 895
Length adjustment: 10
Effective length of query: 492
Effective length of database: 885
Effective search space: 435420
Effective search space used: 435420
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no335_n24.g1 MSMg01no335_n24.g1 CHROMAT_FILE:
MSMg01no335_n24.g1 PHD_FILE: MSMg01no335_n24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:47 2005
(530 letters)
>mm_chr7_93752599_93753528
Length = 930
Score = 978 bits (506), Expect = 0.0
Identities = 524/530 (98%)
Strand = Plus / Minus
Query: 1 actggcaaagtgatcaagctagctcagtgtgtcacagggtcttaagagagtgagtgagga 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 877 actggcaaagtgatcaagctagctcagtctgtcacagggtcttaagagagtgagtgagga 818
Query: 61 ttaaagagataaaagacaattagacaatattaaaacaggactctagctggtactgaagag 120
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 817 ttaaagagataaaagacaattagacaatattaaaacaggactttagctggtactgaagag 758
Query: 121 ggtttattttttcccagaatgcttttataccaagaagaggatcagttcttagatcaaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 ggtttattttttcccagaatgcttttataccaagaagaggatcagttcttagatcaaaga 698
Query: 181 gaacataatcaaacaagacaattaacagagtcccatagtcacagtgtctaaagacttacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 697 gaacataatcaaacaagacaattaacagagtcccatagtcacagtgtctaaggacttacc 638
Query: 241 aggatgaacaagttataaagaataccatacattctttgtctgtatttccttgagccttgc 300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 aggatgaacaagttaaaaagaataccatacattctttgtctgtatttccttgagccttgc 578
Query: 301 attagaccaaatgtaaatattcctgtctgagcctgcactcttgtcctcctaagacagtgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 attagaccaaatgtaaatattcctgtctgagcctgcactcttgtcctcctaagacagtgt 518
Query: 361 aaatatacttgccaatatcctagatgcagcattaagggctctttacatcaaaagaaagta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 aaatatacttgccaatatcctagatgcagcattaagggctctttacatcaaaagaaagta 458
Query: 421 cttttctttaactgtatagtttatctatttacattccaaatgttatccatattcactgta 480
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 457 cttttctttaactctatagtttatctatttacattccaaatgttatccatattcactata 398
Query: 481 tcctccccacaaactccctatccaatccccctccccctgcttctatgaga 530
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tcctccccacaaactccctatccaatccccctccccctgcttctatgaga 348
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space: 478400
Effective search space used: 478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
