BAC Information

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BAC

Clone NameMSMg01-336I19
Chromosome7 (Build37)
Map Location 112,462,388 - 112,462,959
singlet/doubletsinglet
Overlap geneOlfr689
Upstream geneTrim12, Trim34, 9230105E10Rik, A530023O14Rik, EG434219, LOC100041595, Trim30, AI451617, LOC672495, LOC625305, EG625321, Olfr651, Olfr652, Olfr653, Olfr654, Olfr655, Olfr656, Olfr657, Olfr658, LOC667882, Olfr659, GA_x5J8B7W3SPQ-80592-80214, Olfr661, LOC625495, Olfr662-ps1, Olfr663, Olfr664, EG625530, LOC100042613, LOC233637, Dub1a, Dub1, Olfr665, Olfr666, Olfr667, Olfr668, Olfr669, EG545987, Olfr670, Olfr671, Olfr672, GA_x5J8B7W6B6J-189947-189022, Olfr674-ps1, Olfr675, Olfr676, Olfr677, LOC667987, Olfr678, Olfr679, Olfr680-ps1, Olfr681, Olfr682-ps1, Olfr683, Olfr684, Olfr685, Olfr686, EG668035, Olfr688
Downstream geneOlfr690, Olfr691, Olfr692, EG545989, 4632419K20Rik, Cnga4, EG244189, Cckbr, Prkcdbp, Smpd1, Apbb1, Hpxn, Trim3, Arfip2, Fxc1, Dnhd1, LOC100042811, LOC672646, 1500003O22Rik, Ilk, Taf10, Tpp1, Dchs1, Mrpl17, 9130208D14Rik, LOC626055, LOC100042856, LOC100042047, EG668108, EG668117, Gvin1, LOC672660, LOC100042097
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-336I19.T7 (MSMg01no336_i19.b1)MSMg01-336I19.TJ (MSMg01no336_i19.g1)
ACCAG451541AG451542
length732768
length of high quality
(start - end)		576 (43 - 618)50 (72 - 121)
definitionCHROMAT_FILE: MSMg01no336_i19.b1 PHD_FILE: MSMg01no336_i19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:38 2005CHROMAT_FILE: MSMg01no336_i19.g1 PHD_FILE: MSMg01no336_i19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:38 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGTATGTTCAAAAGACCACAAGATTATGGGTGAGACCTATATCACTAC
CTTAAGGCTAGATAAAAATGAACATTTTTTATTTTTCCTCGATTTACAGG
TAGATGCTGAGAACAAGACATCCATGAAATGGGTACTAAGCATGCAACCA
ACAGCTCAGAGTTCCAAGTCTCTGAGTTCATTCTACTGGGATTCCCAGGC
ATTCACGAATTCCAGATCTGGTTGTCCTTGCCTATGGCTCTGCTTTACAT
CATAGCTCTTGGTGCTAATTTCCTTATCTTGATCACCATCTACCTTGAGC
CTAACCTGCATCAGTCAATGTATCAGTTTCTTGGTATCTTGGCTGTAGTG
GATATTGGTTTGGCTACCACCAGCATGCCCAAAATACTGGCCATCTTGTG
GTTTGATGCCAAGACCATCAGCCTCCCTGAGTGTTTTTCTCAGATCTATG
CTATCCACACTTTTATGTCCATGGAGTCAGGCGTCTTTCTATGCATGGCA
ATAGATAGATATGTAGCCATTTGTTATCCCCTCCAGTATCCTTCCATAGT
CACTGAAGCTTTTGTAATCAAAGCCACATTGTCCATGATGCTCAGGAGAG
GCCTGTTAACCATCCCAGTGCCTGTACTAACTTGCCCGAGACAATACTGG
TCCAGAAAAGAAAAAAACCACCGGCCTTGCTC

GATGTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCTAGGTCATGGGTTTTTTCCTCAGTATG
GGGGGGGGGTAGGGGATAGTGGNNAACTCCNNNTCCCGCCGCCTCCTCTG
CCTTTTTTTTTCTGGGAGGGGGTCTCATCTCCTCTCGCCGCTCGCTCCTC
CGCCCTCCGTTCCCCTCTTGCTCTTTCGTCGCGCTGTGTTTTTTTTGCTC
CTCCGGCCGTGGGGCTTCGCCCGGTGTTTGTTACCCCTTCCCTGGGCCCC
GCCTATTTTTTTTTTTTCGGCCCCCCCTCCGCGGGGGTGCGCCGCGCATT
TTTCTCTCTCCTCTCCCCTTTGCAGCATGCACCCCATCGCTTTAATATGT
TTTGTTCCCCCCCCCCCCAAACCTAACTATCCCCGTTTTACTTTCCATAT
CCCCAAATCTTCTCTCTACCCTTATTCCTCTTCTTTATTTCCCCCGTTTG
CTCCCTCCCGTTTATTTTTCCCTCCTCTGCCTTTTCTCCTTTTATGTTTT
CCCCACCCCTTTTTCTCTTCTTTTTTTTCCACCGTTTATTCTTACTCTTC
CGCATATCTATTTTTTTATTGCCTACCATCCTCCCATTATTCGTTCATTT
CCCCTAAATCTCCCTTTCCCCCTTTTATTATTTCCCGCCTCTCCTACGTT
TCTTTTTATTTTTTTACCCCCCTCTTTTCCCCCCCCTTTACCTCCTTCCA
CTCCCTCCTCTAGTTCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no336_i19.b1 MSMg01no336_i19.b1 CHROMAT_FILE:
MSMg01no336_i19.b1 PHD_FILE: MSMg01no336_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:38 2005
         (576 letters)



>mm_chr7_112462184_112463159
          Length = 976

 Score = 1083 bits (560), Expect = 0.0
 Identities = 569/572 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtatgttcaaaagaccacaagattatgggtgagacctatatcactaccttaag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtatgttcaaaagaccacaagattatgggtgagacctatatcactaccttaag 264

                                                                       
Query: 65  gctagataaaaatgaacattttttatttttcctcgatttacaggtagatgctgagaacaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gctagataaaaatgaacattttttatttttcctcgatttacaggtagatgctgagaacaa 324

                                                                       
Query: 125 gacatccatgaaatgggtactaagcatgcaaccaacagctcagagttccaagtctctgag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gacatccatgaaatgggtactaagcatgcaaccaacagctcagagttccaagtctctgag 384

                                                                       
Query: 185 ttcattctactgggattcccaggcattcacgaattccagatctggttgtccttgcctatg 244
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 385 ttcattctactgggattcccaggcattcatgaattccagatctggttgtccttgcctatg 444

                                                                       
Query: 245 gctctgctttacatcatagctcttggtgctaatttccttatcttgatcaccatctacctt 304
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gctctactttacatcatagctcttggtgctaatttccttatcttgatcaccatctacctt 504

                                                                       
Query: 305 gagcctaacctgcatcagtcaatgtatcagtttcttggtatcttggctgtagtggatatt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gagcctaacctgcatcagtcaatgtatcagtttcttggtatcttggctgtagtggatatt 564

                                                                       
Query: 365 ggtttggctaccaccagcatgcccaaaatactggccatcttgtggtttgatgccaagacc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggtttggctaccaccagcatgcccaaaatactggccatcttgtggtttgatgccaagacc 624

                                                                       
Query: 425 atcagcctccctgagtgtttttctcagatctatgctatccacacttttatgtccatggag 484
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atcagcctccctgagtgttttgctcagatctatgctatccacacttttatgtccatggag 684

                                                                       
Query: 485 tcaggcgtctttctatgcatggcaatagatagatatgtagccatttgttatcccctccag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tcaggcgtctttctatgcatggcaatagatagatatgtagccatttgttatcccctccag 744

                                           
Query: 545 tatccttccatagtcactgaagcttttgtaat 576
           ||||||||||||||||||||||||||||||||
Sbjct: 745 tatccttccatagtcactgaagcttttgtaat 776


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space:   546756
Effective search space used:   546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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