Query= MSMg01no336_l04.b1 MSMg01no336_l04.b1 CHROMAT_FILE:
MSMg01no336_l04.b1 PHD_FILE: MSMg01no336_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:50 2005
(519 letters)
>mm_chr7_24575457_24576380
Length = 924
Score = 915 bits (473), Expect = 0.0
Identities = 507/527 (96%), Gaps = 16/527 (3%)
Strand = Plus / Minus
Query: 5 gaattctctgtatgccagaaggcaggaggaataccaattcatggttacgtggaatacata 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 922 gaattctctgtatggcagaaggcaggaggaataccaattcatggttacgtggaatacata 863
Query: 65 caggaatgtggagtcaaaacaagatgagaggaaaaatatgaaaggattcctcacatgaag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 caggaatgtggagtcaaaacaagatgagaggaaaaatatgaaaggattcctcacatgaag 803
Query: 125 gacctgatagggggatagagagattgctcagcaatttagagcactgactactttttcaga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 gacctgatagggggatagagagattgctcagcaatttagagcactgactactttttcaga 743
Query: 185 gatcctgagttcaatttccatcaaccacttggtgactaacaacctacagtgtactctaaa 244
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 742 gatcctgagttcaatttccatcaaccacttggtgactcacaacctacagtgtactctaaa 683
Query: 245 taaataaataaataaa-tttttttaataaaaaaagaaagatctgatactgtcacgggaat 303
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 taaataaataaataaaatttttttaataaaaaaagaaagatctgatactgtcacgggaat 623
Query: 304 taaatccatgttcaaacgaaaaaaaaaa-----gacaggagtataaagtttagccagtca 358
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 622 taaatccatgttcaaacgaaaaaaaaaaaaaaagacaggagtataaagtttagccagtca 563
Query: 359 gtactgaagaggaaaaagtaacaactgtgttgggaaactatagatactgctataaataag 418
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gtactgaggaggaaaaagtaacaactgtgttgggaaactatagatactgctataaataag 503
Query: 419 gactgcattagttaatgatgcatacatgaccacagacagaggtgtgtatgtgtgtgtgtg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gactgcattagttaatgatgcatacatgaccacagacagaggtgtgtatgtgtgtgtgtg 443
Query: 479 tgtgtgtgtgtgtgtgcgt----------atgtgcatgtgtgtgtgt 515
|||||||||||||||| || ||||||||||||||||||
Sbjct: 442 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgcatgtgtgtgtgt 396
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 66
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 924
Length adjustment: 10
Effective length of query: 509
Effective length of database: 914
Effective search space: 465226
Effective search space used: 465226
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no336_l04.g1 MSMg01no336_l04.g1 CHROMAT_FILE:
MSMg01no336_l04.g1 PHD_FILE: MSMg01no336_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:50 2005
(508 letters)
>mm_chr7_24390663_24391570
Length = 908
Score = 180 bits (93), Expect = 2e-49
Identities = 99/101 (98%)
Strand = Plus / Plus
Query: 1 caatcaagtaaaaatacatgcttgtctataaatgttaatttataaatatgaagatcccat 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caatcaagcaaaaatacatgcttgtctataaatgttaatttataaatatgaagatcccat 260
Query: 61 actgggttaaaatgtgggtcatattattgaccaatagagat 101
|||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 actgggttaaaatgtgggtcatgttattgaccaatagagat 301
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space: 447204
Effective search space used: 447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
