BAC Information

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BAC

Clone NameMSMg01-337C08
Chromosome7 (Build37)
Map Location 52,025,167 - 52,025,660
singlet/doubletsinglet
Overlap geneVrk3
Upstream geneKlk12, Klk11, Klk10, Klk9, Klk8, Klk7, Klk6, Klk5, Klk4, Klk2-ps, Klk15, Klk1b7-ps, Klk1b8, Klk1b1, Klk1b9, Klk1b10-ps, Klk1b11, LOC100039713, Klk1b26, Klk1b18-ps, Klk1b27, Klk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16, Klk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854, EG638453, Clec11a, Shank1, 1700008O03Rik, Syt3, Lrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3, Myh14, 1700023D19Rik, Zfp473
Downstream geneEG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1, Med25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1, Bcl2l12, Irf3, AI480556, Rras, Prr12, Prrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2, Gys1, Ftl1, Bax, Dhdh, Nucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-337C08.T7 (MSMg01no337_c08.b1)MSMg01-337C08.TJ (MSMg01no337_c08.g1)
ACCAG451995AG451996
length776765
length of high quality
(start - end)		87 (69 - 155)493 (72 - 564)
definitionCHROMAT_FILE: MSMg01no337_c08.b1 PHD_FILE: MSMg01no337_c08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:25 2005CHROMAT_FILE: MSMg01no337_c08.g1 PHD_FILE: MSMg01no337_c08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGGGGACTTTCTAGAGGGTATATAAATGCTAGGGCCTGAGAGCTAG
TGTGGGTGGTTGGGGGGTTGTTGGTTGCTGTTGTTGTTCGTTATGCTTTG
CTAACTACTCTTTTGCAAAGAAGAAATAACAAGATGAAGTTAAATATCCT
GATGACCAAAATCAAACTTGCTTCAAGAAACTTACTCCCCCTTTCCTACC
CCTAACTTTATTCACGAATTTTTTCCTTTCCTCTTTATCCTTTTTTTCCC
TTGTCTTATGCCCACAACAGTTTTTTATTAACGTGGAATAAAGAACAACT
TACTCCGTATTCTAACACACCCCCCTCCTAGAGGAATGATCTGTTATTTA
CTCTGACTGTGGAACACCCCCCACCCATGTCCTCTCTATTCACTACCATG
TCGCCTCACCCTTGATCTATCCCACTCCCTACATTTTTACCCCCCATTTT
CCTCTTAACCTATCCCTCTCCCATTTTATTCTAAAAACAATACCGCTTCT
CTCCCCCCCCCCCCCCTTCTTTTACCTCCTCCACTTCCATCTCTTTCCTT
TACATACTCTTATATCTCCCTTTTCTTTTCCCCTCCCCATACCACTTCAT
CCCATATCCCCCCCCTTTTCCTCTTTATCTTCTCCTCCCCCCCCTCTACA
CCTTCTCCTTTCCTCCTTACCTCCCCCTCCCACACCACTCTTTTCCCTCC
TCCTCATTTCACTCTCATTCATTCCC

CATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCTGCCATGCATTCCAGCAGGAGACAGTT
TTGGGCTCTGGGGCCGTGCCGCCCAGGGTCGGCTTCTGGCCCACTGTTCC
GGGTGCTGGGTGACCTTCACTTCTGTGAGCCATGTGAGCCCTGTTGTTCT
CCCACTGTAGACTGCTATGTAAGCAGCACCCTAGTCACAAGCATACACAA
TTAGGAGTAAGCACGCTGTACTGGGTTTCATGCTCATTGCATGCAACACA
CCACAACTTATTCACAGGCTGTAGTCTGAGGGCCTACACCTCCAGTCAGT
CACCCTGCCTCCATACCTCCAGGATTAGGAGGTAAAGACTCAGTGAGCCT
TTAGATCTTGGCAGTTGTACTTGGCAGTTACACAGTTGTTAATGATAGAA
GGAAGCAGTGTGCTGGCGTTCAGCACCGAGGACAGCTACACACCCATGTT
GGTGCCTCCTAACTGCCATTCAGCACCTAGGATAGCGGCAGGAATTCCTC
TTTGGAAATCTAAGCACACAGATGACTTTGAAAGGAGGCTTCAGAAACAG
GGACTACTAGATGTTGGGCCTTAAGGCTTGCTCCATTGTGTAAAAATGTG
GCATTTGGTTGTTCGCCTTGGTGCGGTGCCTTCCCACCCCAGGATTTGCA
TAACACCAACCTCGTTATAATTCCTTGATTGGTTCCTTAAGTTCCTTCCC
TCCACTACTTAGGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no337_c08.g1 MSMg01no337_c08.g1 CHROMAT_FILE:
MSMg01no337_c08.g1 PHD_FILE: MSMg01no337_c08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:25 2005
         (493 letters)



>mm_chr7_52024967_52025860
          Length = 894

 Score =  909 bits (470), Expect = 0.0
 Identities = 488/494 (98%), Gaps = 1/494 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgccatgcattccagcaggagacagttttgggctctggggccgtgccgcccagggtcg 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 tctgccatgcattccagcaggagacagttttgagctctggggccgtgccgcccagggtcg 260

                                                                       
Query: 61  gcttctggcccactgttccgggtgctgggtgaccttcacttctgtgagccatgtgagccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcttctggcccactgttccgggtgctgggtgaccttcacttctgtgagccatgtgagccc 320

                                                                       
Query: 121 tgttgttctcccactgtagactgctatgtaagcagcaccctagtcacaagcatacacaat 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 tgttgttctcccactgtagactgctatgtaagcagcacccgagtcacaagcatacacaat 380

                                                                       
Query: 181 ta-ggagtaagcacgctgtactgggtttcatgctcattgcatgcaacacaccacaactta 239
           || |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 381 tagggagtaagcacgctgtacagggtttaatgctcattgcatgcaacacaccacaactta 440

                                                                       
Query: 240 ttcacaggctgtagtctgagggcctacacctccagtcagtcaccctgcctccatacctcc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcacaggctgtagtctgagggcctacacctccagtcagtcaccctgcctccatacctcc 500

                                                                       
Query: 300 aggattaggaggtaaagactcagtgagcctttagatcttggcagttgtacttggcagtta 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggattaggaggtaaagactcagtgagcctttagatcttggcagttgtacttggcagtta 560

                                                                       
Query: 360 cacagttgttaatgatagaaggaagcagtgtgctggcgttcagcaccgaggacagctaca 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacagttgttaatgatagaaggaagcagtgtgctggcgttcagcaccgaggacagctaca 620

                                                                       
Query: 420 cacccatgttggtgcctcctaactgccattcagcacctaggatagcggcaggaattcctc 479
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cacccgtgttggtgcctcctaactgccattcagcacctaggatagcggcaggaattcctc 680

                         
Query: 480 tttggaaatctaag 493
           ||||||||||||||
Sbjct: 681 tttggaaatctaag 694


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 894
Length adjustment: 10
Effective length of query: 483
Effective length of database: 884
Effective search space:   426972
Effective search space used:   426972
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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