BAC Information

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BAC

Clone NameMSMg01-337I22
Chromosome7 (Build37)
Map Location 37,335,470 - 37,335,903
singlet/doubletsinglet
Overlap genenone
Upstream geneNudt19, Rgs9bp, Ankrd27, Pdcd5, Dpy19l3, zfp507, LOC100043872, EG668988, LOC668507
Downstream geneTshz3, LOC100043874, Zfp536
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-337I22.T7 (MSMg01no337_i22.b1)MSMg01-337I22.TJ (MSMg01no337_i22.g1)
ACCAG452305AG452306
length782779
length of high quality
(start - end)
529 (40 - 568)495 (69 - 563)
definitionCHROMAT_FILE: MSMg01no337_i22.b1 PHD_FILE: MSMg01no337_i22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:58 2005CHROMAT_FILE: MSMg01no337_i22.g1 PHD_FILE: MSMg01no337_i22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATTCC
TAAGTGTGTCAACAAGTGGGACCCCGATTCTTGTGCCTGCTCTTTGGGAT
CTTTTACTCCTGTTGGGTTGTCTGGTTCAGCCTTGATGTGATGGGTTTTG
CCTTTTTATTGTATTTTATTTTGTCACGTTTGGTTGTTATCTCTTAGAAG
CCTGTTTCTTTTTAAATGAGAGATAGAAACGGAGTGGATACAGAGGGGAA
GGGAGGAACTGGGAGGAGTAGAGGAAGGGGAAACTAATCAGGAAATATTG
TATGAGAGAAGAATCTGTCTTCTATAAAAAGGGAAAATATCCTCATATGC
CCAAGCATTCAGATAGTTAGTAGCCAGCTGGTGGCAATATTTGGGAAGGT
TACAGAACTTGTAGTGGGTGGAGACTTTCTAGAGAAAATATGTAACTGGG
GGTGGGAACTGGAGTGGACTTGACGCATTTACTGCCTGGCCTTGCTTTTT
CAGTATGTTAGCTATGTAAGGGTGAAGAGGTGACCAGCAAGCTTCCTGCT
CCTGCCACCACTGCCGCCATGCTTTCCTGGACAGTTTCCACTCTCAATAT
CTCTGGAATGGTAAGGCATAATGAACCCTTTCTTCCTTAAGGTGCTTTCA
TTTAAGGGATTTTATCACTACGGGGAAATTCACCTATGGCATTCCGAAAA
CCCCAGGGAAATGAAGGGAGTTTTCAACCTGGTTTTTTAAACCCAACTTT
TCTCTTGGCAAGGAACTCGGGATTCCCCCAAN
ATGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATTCATGGGTGTATCCACATCTTCATGGTATT
GTAGGAAGGTGGTTGAAATGAGGAGGTAGCGGTCTCCTTGGAGGAATTAG
GTCAGCGGGGAAGTGGCCTTTGATAGGTGTCTTGCTTCAGACTTCTCAAC
CTCCTTCCTTTGCTTTGAGGCTCACAGCTTCCCTGCCTTGTTATCCTTCT
GCCACATTTCTGTCTTTCAAGGAGCCTGAACACAAGAGGGTCACCCTCAA
AAGACTGAACTCCATCAAAGCATGAGCCAAATAAACTTTTTATCCCAAGC
CCCTTTTCCTCAGAGATTTGGTCACTGCAGTGTAAAACTAACCAACACAC
ACTGTGAAGTCCCATTACTGGATTGCAGCCCTGTTCCTTTGGGCGGCTCC
TGTAAATCCTTCTTTTTCTAGTTCTTGCATGTCCCGCAGCCAGAGCGTGG
CAGCCCAGGGTCAGGGCTCTGTCATACAAGCAAGCCTGCCTTCCACCCAC
ATCACCACAGAACAGGCTTGACAAATGCTACTGTGTGTTCCTCTTTGGAT
TCCCCAACCGAACAGCCTGCCTTTCCTGGGACACAGGCATAACGATATGT
TCCTTCCACCCATGAGATTTCCCTGGTCTTCAAATTTTACCCCAGGGGGC
CCGCCTGATTTTTCGGCCCCTCCCTAATTGTAAATGGTGGTTTACCCCTG
AGGTGGGGGAAGGGCTTCTCGCCACCCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no337_i22.g1 MSMg01no337_i22.g1 CHROMAT_FILE:
MSMg01no337_i22.g1 PHD_FILE: MSMg01no337_i22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:58 2005
         (495 letters)



>mm_chr7_37335470_37336364
          Length = 895

 Score =  754 bits (390), Expect = 0.0
 Identities = 423/434 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcatgggtgtatccacatcttcatggtattgtaggaaggtggttgaaatgaggaggta 60
           |||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 434 attcatgggtgtattcacatcttcattgtgttgtaggaaggtggttgaaatgaggaggta 375

                                                                       
Query: 61  gcggtctccttggaggaattaggtcagcggggaagtggcctttgataggtgtcttgcttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gcggtctccttggaggaattaggtcagcggggaagtggcctttgataggtgtcttgcttc 315

                                                                       
Query: 121 agacttctcaacctccttcctttgctttgaggctcacagcttccctgccttgttatcctt 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 314 agacttctcaacctccttcctttgctttgaggctcacagcttccctaccttgttatcctt 255

                                                                       
Query: 181 ctgccacatttctgtctttcaaggagcctgaacacaagagggtcaccctcaaaagactga 240
           ||||||||||||| |||| ||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 254 ctgccacatttctatcttgcaaggaggctgaacacaagagggtcaccctcaaaaaactga 195

                                                                       
Query: 241 actccatcaaagcatgagccaaataaactttttatcccaagccccttttcctcagagatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 actccatcaaagcatgagccaaataaactttttatcccaagccccttttcctcagagatt 135

                                                                       
Query: 301 tggtcactgcagtgtaaaactaaccaacacacactgtgaagtcccattactggattgcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 tggtcactgcagtgtaaaactaaccaacacacactgtgaagtcccattactggattgcag 75

                                                                       
Query: 361 ccctgttcctttgggcggctcctgtaaatccttctttttctagttcttgcatgtcccgca 420
           |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 74  ccctgttcctttggacggctcctgtaaatccttctttttctagttcttgcatgtcccgaa 15

                         
Query: 421 gccagagcgtggca 434
           |||| |||||||||
Sbjct: 14  gccaaagcgtggca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space:   429225
Effective search space used:   429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)