Query= MSMg01no337_k02.b1 MSMg01no337_k02.b1 CHROMAT_FILE:
MSMg01no337_k02.b1 PHD_FILE: MSMg01no337_k02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:04 2005
(642 letters)
>mm_chr7_106123338_106124379
Length = 1042
Score = 1114 bits (576), Expect = 0.0
Identities = 621/642 (96%), Gaps = 15/642 (2%)
Strand = Plus / Plus
Query: 3 gaattcaaactttcttgc-caagataacatgggccaatatacagaaaattcaaacactga 61
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcaaactttct-gctcaagataacatgggccaatatacagaaaattcaaacactga 261
Query: 62 gagaaatgatgacaacaataaaatatacagaaatttaaccgagggcgtgcaagacttgta 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gagaaatgatgacaacaataaaatatacagaaatttaaccgagggcgtgcaagacttgta 321
Query: 122 tatggaaaagtataaaactaccaaggaaaaggacctaaacaaagacaacctgttactaat 181
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 322 tatggaaaagtataaaactaccaaggaaaaggacctaaacaaagacaagctgttactaat 381
Query: 182 aattactagtaagatgccaatacttggtcattagatggcaatataatcaccttcaaaatc 241
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 382 aattactagtaagatgccaatacttggtcattagatggcaacataatcaccttcaaaatc 441
Query: 242 attcaaagttggcaaacctgatcttctaattcctaatgaattgcaaaggaccccaaatag 301
||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 442 attcagagttggcaaacctgatcttccaattcctaaggaattgcaaaggaccccaaatag 501
Query: 302 ccaaaacagtactgcaaaggaacaaataatggagttccttcccttcaaaattgcaaacat 361
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 502 ccaaaacagtactgcaaaggaacaaata-tggagttccttcccttcaaaattgcaaacat 560
Query: 362 tattatggttctggcttaaaagcatatatatatatagagagagagaccactgaaagagaa 421
|||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 561 tattatggttctggcttaaaagcatatatatata----------gaccactgaaag-gaa 609
Query: 422 -ttaagaaataatccatgaccaattaattttttttgcaacaaggatgccaaggccattca 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 attaagaaataatccatgaccaattaattttttttgcaacaaggatgccaaggccattca 669
Query: 481 agggagaaagaacagcctttgcaacacactataaataataaaaactaataatccaaaatg 540
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 670 agggagaaagaacagcctttgcaacaaactataaataataaaaactaataatccaaaatg 729
Query: 541 gaacaaatagctgcctttcagaataaagttaaagttacagctggcagtggtagcgcacaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 gaacaaatagctgcctttcagaataaagttaaagttacagctggcagtggtagcgcacaa 789
Query: 601 ctttgatcctggcgctggggaggcagaggcaggtgaatctct 642
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 ctttgatcctggcgctggggaggcagaggcaggtgaatctct 831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space: 652224
Effective search space used: 652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no337_k02.g1 MSMg01no337_k02.g1 CHROMAT_FILE:
MSMg01no337_k02.g1 PHD_FILE: MSMg01no337_k02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:04 2005
(439 letters)
>mm_chr7_106289916_106290754
Length = 839
Score = 833 bits (431), Expect = 0.0
Identities = 437/439 (99%)
Strand = Plus / Minus
Query: 1 acatatgagtgtttgaattcggggaggctgtgtgtgttaaatgactattaaaagacaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 acatatgagtgtttgaattcggggaggctgtgtgtgttaaatgactattaaaagacaaag 762
Query: 61 tggaggctgctgtggtggcacactcctgtagtcccagcacctggggagctgaggtagatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 tggaggctgctgtggtggcacactcctgtagtcccagcacctggggagctgaggtagatt 702
Query: 121 gagctacatggtgagtggcaggtcagccaaatctcgcccctccccccgccccgcccccgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 gagctacatggtgagtggcaggtcagccaaatctcgcccctccccccgccccgcccccgc 642
Query: 181 gcaaagcaagtaaacaaacaaagacaacacaatagaataagcaggtctgtggtaaaggca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 gcaaagcaagtaaacaaacaaagacaacacaatagaataagcaggtctgtggtaaaggca 582
Query: 241 agtttcctatttctgagtttcagagaagtcttttggaaggactcctgccccagctgaaat 300
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 agtttcctaattcggagtttcagagaagtcttttggaaggactcctgccccagctgaaat 522
Query: 301 acgatggctaagcaagcgttagtcacaagcagtaaaggctttctaggcagagcataagca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 acgatggctaagcaagcgttagtcacaagcagtaaaggctttctaggcagagcataagca 462
Query: 361 tcccaccagcagaggtgagacagtctcttggctggctggcacactttgtggctaagctta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tcccaccagcagaggtgagacagtctcttggctggctggcacactttgtggctaagctta 402
Query: 421 ctagttatagaagctagaa 439
|||||||||||||||||||
Sbjct: 401 ctagttatagaagctagaa 383
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space: 356900
Effective search space used: 356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
