BAC Information

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BAC

Clone NameMSMg01-337M20
Chromosome7 (Build37)
Map Location 127,122,555 - 127,123,055
singlet/doubletsinglet
Overlap geneDnahc3
Upstream geneGprc5b, Gpr139, LOC100042871, Gp2, Umod, 1700007B13Rik, C730027J19Rik, Acsm2, Acsm1, BC048390, Thumpd1, EG434233, Acsm3, Exod1, 2610020H08Rik, Dcun1d3, LOC100043399, LOC100043396, Lyrm1
Downstream geneTmem159, Zp2, Anks4b, Crym, Abca14, Abca15, Abca16, LOC668429, LOC546994, LOC100042914, E130201H02Rik, LOC637957, Uqcrc2, 4930408O21Rik, BC030336, E030013G06Rik, EG436008, LOC100043426, Eef2k, Polr3e, Cdr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-337M20.T7 (MSMg01no337_m20.b1)MSMg01-337M20.TJ (MSMg01no337_m20.g1)
ACCAG452488AG452489
length774771
length of high quality
(start - end)		329 (60 - 388)501 (67 - 567)
definitionCHROMAT_FILE: MSMg01no337_m20.b1 PHD_FILE: MSMg01no337_m20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:17 2005CHROMAT_FILE: MSMg01no337_m20.g1 PHD_FILE: MSMg01no337_m20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTCCTGTCGCTATACGANTACTATAGTCAGAGATCCGCGGAATTACCTC
CAGTTCCAGACAGGGCCTCAAGTGGGGGGGGGGGCAGGGTTACAAACCAG
TTAAAATTTTTGACCCAAAATTGTTCCTGTCTAAACTACAGGGACAAAAA
TGGAGAAGACACTGAAGGAAGTTGGGTCCAATGACCAGCCTAAATTGGGA
TCCGTCTCATGGGGGTGCACCATGACCTGATACTATTATTGATGCTATGA
TGCGCTTACAGACTAGAGCCTGTCATGGCTGTTCTGAGAGGCCCTACCAG
CAGCTGACTGTAACATACTCACATACTTATACCCAACCATTGAACTGAAG
TCAGGGATCCCTATGGTTAAATTAGGAAAAGGGCTGAAGAATCTGAAAGG
AATGGCCCCCCCCTCACAAGACCAGCAGTCTTCACTAAGCCCGACCCCAA
GGAGCTCCCGGAGACTGAGCCCCCAACCAGGCAAAATACATAAGCTGGTC
AAAGGCCTCCGGCACCTATTAAGCAAAAAATTGGCCGTTCTATTCTCCCT
GAGAGAAGAAACCCTTAATTCCACAAAAAATTGAAGCCTCCCCAAACCCA
AGAAGCTTGTTGGGTTGAGTAAGCAAGGTTTAAAAAAAATGTGAAGACAG
ACTTGTTTTATTTGGGCCTCTAATTTTTTTTATTTTTCGGTCCCTCTTCT
TCGTTTTNTTTTTTCTTGTTGTATCTAATTACTCTCCCATCTTTTACTGA
TTCACTTCTGCATTCTCCTTCTGA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCAGAAGCTATGATTGGGGTCTCTAAATCCACTTA
GGAGCTGAGTCCCAGGGAGAATATATTCAATTTCCATATTGGAAAAAATG
GGAGATTCGGTGGGTGTGGGTCTTGGGTTCGAGAATCTCAATGTTGGGGA
AAATGAATCAGGAACAAGATAAGTCTTCTGGCATTAGCTTTGTGTCACTA
TGGCAGAATGTCTGAGAGTCAACTCTGAGGAGGAAATGCAAACTTTAGCT
CATGATTTTATGCTATGCTTGCTTAGCCCCATTGTCACAGGGCTAGTATT
GAGGTATAACATTACTACAGAAGGGCCACGCAGAGAAAAACCCACTCACC
TCATAATGTCTAGGAAGCAGAGAATAGAGAGAACAAGGGTAGGATATAAG
CCTGAAAAATGTGCTCCAAAGACCCCTCTACCCTCTTCAATGTATCTTAT
CTCTTATGTCTACCAACTTCCAATAAACCAATGAGCTATGAACCCATCAA
GGGATTAATATATTGATGGGGCCAAACCCCTTAGGATTCCATTACTTCAC
AAAATCCCCATTTCTGAAAATTTCTACATTGGAGACCAAACCTTCCACAT
ATAAGTCTTTCTATATGACTACAACTTATCTAAACCTTTTAAGCCAAAAA
AAGTGGGCAAGGAAGGGGGGTCCTTGCTGAAAAAAAGCAAAAAATTTGGT
TAAAAAAGTTCCCAAAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no337_m20.g1 MSMg01no337_m20.g1 CHROMAT_FILE:
MSMg01no337_m20.g1 PHD_FILE: MSMg01no337_m20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:17 2005
         (501 letters)



>mm_chr7_127122355_127123255
          Length = 901

 Score =  969 bits (501), Expect = 0.0
 Identities = 501/501 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaagctatgattggggtctctaaatccacttaggagctgagtcccagggagaatatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 cagaagctatgattggggtctctaaatccacttaggagctgagtcccagggagaatatat 642

                                                                       
Query: 61  tcaatttccatattggaaaaaatgggagattcggtgggtgtgggtcttgggttcgagaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 tcaatttccatattggaaaaaatgggagattcggtgggtgtgggtcttgggttcgagaat 582

                                                                       
Query: 121 ctcaatgttggggaaaatgaatcaggaacaagataagtcttctggcattagctttgtgtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 ctcaatgttggggaaaatgaatcaggaacaagataagtcttctggcattagctttgtgtc 522

                                                                       
Query: 181 actatggcagaatgtctgagagtcaactctgaggaggaaatgcaaactttagctcatgat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 actatggcagaatgtctgagagtcaactctgaggaggaaatgcaaactttagctcatgat 462

                                                                       
Query: 241 tttatgctatgcttgcttagccccattgtcacagggctagtattgaggtataacattact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tttatgctatgcttgcttagccccattgtcacagggctagtattgaggtataacattact 402

                                                                       
Query: 301 acagaagggccacgcagagaaaaacccactcacctcataatgtctaggaagcagagaata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 acagaagggccacgcagagaaaaacccactcacctcataatgtctaggaagcagagaata 342

                                                                       
Query: 361 gagagaacaagggtaggatataagcctgaaaaatgtgctccaaagacccctctaccctct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 gagagaacaagggtaggatataagcctgaaaaatgtgctccaaagacccctctaccctct 282

                                                                       
Query: 421 tcaatgtatcttatctcttatgtctaccaacttccaataaaccaatgagctatgaaccca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tcaatgtatcttatctcttatgtctaccaacttccaataaaccaatgagctatgaaccca 222

                                
Query: 481 tcaagggattaatatattgat 501
           |||||||||||||||||||||
Sbjct: 221 tcaagggattaatatattgat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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