NCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGGAATTTACGATGAAAATATGCTGTATGTAATTGTCAAAGAA
TTAATAAAAAATAGTATTAAATGACCAAAAATGATCAGAGTTAAGACCCC
ACAAACATTTCTTGCTTAGAATTAGCAGAGATAACCAAAAAGTTTAAAGA
TCAAGATAATACTGCTCACTTATGGTATATTTATCTCTGTGTGTGGGTGT
ATAGGATTCTGAGATGCTGAATAGATAGATAGGTTTTGGATTAACACTAG
TTAACTCTGATATTGCCTTTTTAGTCTCTTGTAATGTCGAACATCAATGC
TGAGTCTTGGGCTTTCGGAGAATATTTTCTCCTCCTGTAAGATGTCTTCC
TTAACTTCCATAACCTCCTTTCATAAATTCCATGACCTACAAATACATAT
ATAAACTTATTCAAATATATGCGCATGCATATATATATATATATATACAC
ACACACACACACACACATATATATGTATAATTTTAAATCCAAGTTCCTCA
TATGAGAGAAATGTACAATATCTATTTTGTGTTTATAAAAAGATAATGGA
GAGAAGAAATATGTTTGGTTGGGGTGAAGTCAGGAATGAGGGAAAGGGGG
TTCCTTTGCTGGCCCATTGGGACCCGGCACACTATGGAATGTTAGCGTTT
TCAAGACTAATAATGGCGCCCTAAATCCCCCCAGTAATTTTATT

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGCTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAG
ATCAGTCTGGCGGTTCCTCATATTTCTGGATATAGTACTACCGGAGGATC
CAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAG
AAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAGA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTGGCCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGGAACTCCCACAATATGTACTCCCTGAAAA
GTGGATATTTCGCCCAAAACCTAAAATCCCCAGAAAATAAGAATCAATTT
CCTAACAACCTGGAAATTCTCTAAAATATGAAAACTGGTGTGGGGTCACT
TT

Query= MSMg01no337_p05.b1 MSMg01no337_p05.b1 CHROMAT_FILE:
MSMg01no337_p05.b1 PHD_FILE: MSMg01no337_p05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:28 2005
         (549 letters)



>mm_chr7_66432494_66433441
          Length = 948

 Score =  953 bits (493), Expect = 0.0
 Identities = 536/557 (96%), Gaps = 13/557 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaggaatttacgatgaaaatatgctgtatgtaattgtcaaagaattaataaaaaa 64
           |||||||||||  || |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 589 gaattcaggaaaatatgatgaaaatatgctgtatgtaattgtcaaagaattaat-aaaaa 531

                                                                       
Query: 65  tagtattaaatgaccaaaaatgatcagagttaagaccccacaaacatttcttgcttagaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 tagtattaaatgaccaaaaatgatcagagttaagaccccacaaacatttcttgcttagaa 471

                                                                       
Query: 125 ttagcagagataaccaaaaagtttaaagatcaagataatactgctcacttatggtatatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 ttagcagagataaccaaaaagtttaaagatcaagataatactgctcacttatggtatatt 411

                                                                       
Query: 185 tatctctgtgtgtgggtgtataggattctgagatgctgaatagatagataggttttggat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 tatctctgtgtgtgggtgtataggattctgagatgctgaatagatagataggttttggat 351

                                                                       
Query: 245 taacactagttaactctgatattgcctttttagtctcttgtaatgtcgaacatcaatgct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 taacactagttaactctgatattgcctttttagtctcttgtaatgtcgaacatcaatgct 291

                                                                       
Query: 305 gagtcttgggctttcggagaatattttctcctcctgtaagatgtcttccttaacttccat 364
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 gagtcttgggcttttggagaatattttctcctcctgtaagatgtcttccttaacttccat 231

                                                                       
Query: 365 aacctcctttcataaattccatgacctacaaatacatatataaacttattcaaatatatg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 aacctcctttcataaattccatgacctacaaatacatatataaacttattcaaatatatg 171

                                                                       
Query: 425 cgcatgcatatatatata--tatatatacac----------acacacacacacacacata 472
           ||||||||||||||||||  |||||||| |           | | |||||||||||||||
Sbjct: 170 cgcatgcatatatatatacatatatatatatgtatatatatatatacacacacacacata 111

                                                                       
Query: 473 tatatgtataattttaaatccaagttcctcatatgagagaaatgtacaatatctattttg 532
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 tatatgtataattttaaatccaagttcctcatatgagagaaatgtacaatatctattttg 51

                            
Query: 533 tgtttataaaaagataa 549
           |||||||||||||||||
Sbjct: 50  tgtttataaaaagataa 34


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 948
Length adjustment: 10
Effective length of query: 539
Effective length of database: 938
Effective search space:   505582
Effective search space used:   505582
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)