AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGCCCCACTTGCTCATCATTGAATGTTTGATCTTAGTGGCACTATT
CTGGAAACTTTAGGAGGTGGCACCTGGATGAAGGAATTAGGACACTGGAG
CTATAGCTTTCAAGGTTCTATCTGGCCCCTGAGTCGCTTACTCTCACCCC
TCTTCTTGTCTACCCAGAGATGATGAATTTCCCCTGTCACTCACTCCCAG
CCTCTGATATACTATGTCAGTGCAGGCTCAGAATCAGCTGAGCCAAGGAC
TGGGAGATGAAAGATCTGAAACCACAAGGTAAGTCTTTCTTCCCTTAATG
GGTTCTCTCTGTTCCATGGTACCAGGAACGAAATACTAGCACAGCCCCCT
TGCCAGCTGCAGCACTTGGGAAAGCAGGCCCCACACCTTGCTTGGGCAGC
ACAGTAGAGTTGGCCCTGGTGGCATGGGTGGAGAAAAGCAGGCTTCAAGT
GTATAACCTCTAGAGATGGCCTTGTCCCTTGCCAGGGCAGTGCTGGAGAG
CTGACCCTGGTGGTTGGGTGTGGAAAAGCTGATCCTGATGGTGTAAGTGT
GGGAGTTCTGGTGGGCTCAGCAACTCAGCTACCACCCAGACCCAGATCCA
GGGCTTTGAGTTGGGCCATCCCAACATCTATCTCATTTATGAACTGCTTG
GAGCAGGCTGAAGGGGTTGGTTCTGCANAN

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTATAAAAAGGGTAAAGTAAGCTG
AATACAAGCATTGACTACTCTCCACTTCTTGACTCTGGATGCAATGTGAT
GAGCTGCCCAAGCTCCTGCTGCTGCAACGTAACTTCCTTATAGTGATTGA
CTCTGTTCTTGAACTCAGAGCCAAAGTAAAGCACTCTTTCTCAACTTGCT
TTTGTCAGGGTATTTTTACCATAGCAATAGAAAAGTAAAGAAGCTGGGCA
ATGGTGGTGCACGCCTTTGATCCCAGCACTTGGGAGGCAGAGGCAGGCGA
ATTTTTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGC
CAGGGCTACACAGAGAAACTCTGCCTTGGGAAAAGAAAGAAAGAGAGAGG
GGAGGAGGGAGAGGGAGAGGGAGAGGNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

Query= MSMg01no340_i11.b1 MSMg01no340_i11.b1 CHROMAT_FILE:
MSMg01no340_i11.b1 PHD_FILE: MSMg01no340_i11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:33 2005
         (556 letters)



>mm_chr7_124838624_124839584
          Length = 961

 Score =  959 bits (496), Expect = 0.0
 Identities = 541/558 (96%), Gaps = 6/558 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgccccacttgctcatcattgaatgtttgatcttagtggcactattctggaaac 64
           ||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 205 gaattctgccccacacgctcatcattgaatgtttgatcttagtgacactattctggaaac 264

                                                                       
Query: 65  tttaggaggtggcacctggatgaaggaattaggacactggagctatagctttcaaggttc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttaggaggtggcacctggatgaaggaattaggacactggagctatagctttcaaggttc 324

                                                                       
Query: 125 tatctggcccctgagtcgcttactctcaccc----ctcttcttgtctacccagagatgat 180
           ||||||||||||||||| |||||||||||||    |||||||||||||||||||||||||
Sbjct: 325 tatctggcccctgagtcacttactctcacccctctctcttcttgtctacccagagatgat 384

                                                                       
Query: 181 gaatttcccctgtcactcactcccagcctctgatatactatgtca-gtgcaggctcagaa 239
           ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 385 gaatttcccctgtcactcactcccagcctctgatatactatgtcaggtgtaggctcagaa 444

                                                                       
Query: 240 tcagctgagccaaggactgggagatgaaagatctgaaaccacaaggtaagtctttcttcc 299
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 445 tcagctgagccaaggactgggagatgaaagatctgaaaccacaaggtaagtctttctttc 504

                                                                       
Query: 300 cttaatgggttctctctgttccatggtaccaggaacgaaatactagcacagcccccttgc 359
           ||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||
Sbjct: 505 cttaatgggttctctctgtaccgtggtaccaggaacgaaatgctagcacagcccccttgc 564

                                                                       
Query: 360 cagctgcagcacttgggaaagcaggccccacaccttgcttgggcagcacagtagagttgg 419
           ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct: 565 cagctgcagcacttgggaaagcaggccccacaccttgtttgggcagcacagtagagctgg 624

                                                                       
Query: 420 ccctggtggcatgggtggagaaaagcaggcttcaagtgtataacctctagagatggcctt 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccctggtggcatgggtggagaaaagcaggcttcaagtgtataacctctagagatggcctt 684

                                                                       
Query: 480 gtcccttgccagggcagtgctggagagctgaccc-tggtggttgggtgtggaaaagctga 538
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 685 gtcccttgccagggcagtgctggagagctgacccctggtggttgggtgtggaaaagctga 744

                             
Query: 539 tcctgatggtgtaagtgt 556
           ||||||||||||||||||
Sbjct: 745 tcctgatggtgtaagtgt 762


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 961
Length adjustment: 10
Effective length of query: 546
Effective length of database: 951
Effective search space:   519246
Effective search space used:   519246
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)