BAC Information

Click to search

BAC

Clone NameMSMg01-341G12
Chromosome7 (Build37)
Map Location 52,023,287 - 52,023,626
singlet/doubletsinglet
Overlap geneVrk3
Upstream geneKlk12, Klk11, Klk10, Klk9, Klk8, Klk7, Klk6, Klk5, Klk4, Klk2-ps, Klk15, Klk1b7-ps, Klk1b8, Klk1b1, Klk1b9, Klk1b10-ps, Klk1b11, LOC100039713, Klk1b26, Klk1b18-ps, Klk1b27, Klk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16, Klk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854, EG638453, Clec11a, Shank1, 1700008O03Rik, Syt3, Lrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3, Myh14, 1700023D19Rik, Zfp473
Downstream geneEG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1, Med25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1, Bcl2l12, Irf3, AI480556, Rras, Prr12, Prrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2, Gys1, Ftl1, Bax, Dhdh, Nucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341G12.T7 (MSMg01no341_g12.b1)MSMg01-341G12.TJ (MSMg01no341_g12.g1)
ACCAG455210AG455211
length757795
length of high quality
(start - end)		433 (67 - 499)418 (72 - 489)
definitionCHROMAT_FILE: MSMg01no341_g12.b1 PHD_FILE: MSMg01no341_g12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:39 2005CHROMAT_FILE: MSMg01no341_g12.g1 PHD_FILE: MSMg01no341_g12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAGGAGCCGCGGAA
NNCANCATTTGCATCAGAGCTACCAAGAGCTGGCTCCCCGAGCCCATCCA
GCGATGAGCACAGGCTCCTTTTCCTAGAGACCTCCGCTAATTGATCTTTC
TTCTTTTCCCTTTTTCCTCTTTTTCTTCTAATCTCTCTCCAGGTATTCCT
ACCTAACCTTAACTTTTCCTCGGGTTCAAGACCCTTGGAAAGGCCTGTAT
ACTTATTTTGTGTACCATATTTCCTCTTTGTTCCTACTCTCTCTCCCCAC
TTTACTTCTGATATTTTGTCCTGAATTTCCTCTAGAATTTTCAGCCCTAT
CTTAATCACTTGATAACATGTGAAAAGGAACAAAAGGGCTCCTAACACCA
GAAAAAATTCAAGGCCAAACATATTCCACTTTACTTCTGATAGACTGTCT
TGAATTTCCTTAGAAAGTTCAAGACCAGACTTACCTCGCAAAGCTGTACT
CACTGGTACTCTCGTTCCCCAGCTGACAAGTTCTGAATTTCTACCGTTGA
ATCCTTTTTAATAGCCTGGTTTTTGGGAAACTTTTATACCGCGATCCGCA
GTTCTGGTTTTGTCATGAGCGACTTTTTTTGTGCCCGTCCCCGATTTTCT
TCTTGCCTCGAAACTGCCGTTCCCCTTGTTCACACCCGTTTTTCCCCCTG
TTCCCTTTCCACCGTTTTCCCTAACCTTTCTTGGCGTTCTTATTTGCCTT
TCCCCCG

ATGATACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGCAGCATCCCTACTTTGGGCCTCAGCTG
AGATGCAACACTATGGTGGACCAAGTGTGGAGTGGGGGCTGCTCACATTG
CAGGCTAAAGAGTAGAGAGCAATGGAGGGGAGACAGGGAGAAGACAAGAA
ACATCTTCCACGGGCTGGAGAGATGCCTGAGCAGCTAAAAGCACTGGCTG
TTCTTCAGAGGCTCTGTGCTCAATTCCCAGCACCCACATGGCAGCTCACA
ATAGTCTCTAACTCCTATTCCAGGGACTCCTACACCCTCACAAATATACA
CATGCAAGTGAAACATCAATGCTCATAAAATTAAAATAAATAGATCTTGA
AAAAAAAAGATGCACCCTTGAAAGGCATGCTCTTGGGCCCCATTCCTCTG
GATTCTTACCACCTTGTAAAGACACCACCAAATGATGGCTCCAACAGTCG
AGAAGTCTAGTGTGTAGTCAGAGCCCTTTGATCATGCACACCCAAACCCC
CACTCTGAACCCTAATCTTGTAAATGTAGCTTTCATCACACATATCCCTT
TAACCCTTGACCTGCTTCGTATTTCCCAATACCCCCCCCTGGGCCCTATT
TCCTTATAAATTCCCTCCTCCCACTCCTGCCCTTTTCGGAAAACCTTTCC
CTTTTATCATGTCCCCGTGCCCTTTCGTCGTCCCCCTCTTAGACACACCG
CACTAATTGGTTTCATTTTACGCCCGCCCTTGTTATTCACCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_g12.g1 MSMg01no341_g12.g1 CHROMAT_FILE:
MSMg01no341_g12.g1 PHD_FILE: MSMg01no341_g12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:39 2005
         (418 letters)



>mm_chr7_52023287_52024104
          Length = 818

 Score =  634 bits (328), Expect = 0.0
 Identities = 337/340 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcagcatccctactttgggcctcagctgagatgcaacactatggtggaccaagtgtgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 agcagcatccctactttgggcctcagctgagatgcaacactatggtggaccaagtgtgga 281

                                                                       
Query: 61  gtgggggctgctcacattgcaggctaaagagtagagagcaatggaggggagacagggaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 gtgggggctgctcacattgcaggctaaagagtagagagcaatggaggggagacagggaga 221

                                                                       
Query: 121 agacaagaaacatcttccacgggctggagagatgcctgagcagctaaaagcactggctgt 180
           ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 220 agacaagaaacttcttccacgggctggagagatgcctgagcagctacaagcactggctgt 161

                                                                       
Query: 181 tcttcagaggctctgtgctcaattcccagcacccacatggcagctcacaatagtctctaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 tcttcagaggctctgtgctcaattcccagcacccacatggcagctcacaatagtctctaa 101

                                                                       
Query: 241 ctcctattccagggactcctacaccctcacaaatatacacatgcaagtgaaacatcaatg 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 ctccaattccagggactcctacaccctcacaaatatacacatgcaagtgaaacatcaatg 41

                                                   
Query: 301 ctcataaaattaaaataaatagatcttgaaaaaaaaagat 340
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 40  ctcataaaattaaaataaatagatcttgaaaaaaaaagat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space:   330881
Effective search space used:   330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |