BAC Information

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BAC

Clone NameMSMg01-341L06
Chromosome7 (Build37)
Map Location 56,630,108 - 56,630,486
singlet/doubletsinglet
Overlap gene5330421F07Rik
Upstream geneMrgprb8, Mrgprb1, Mrgprx2, Mrgprb2, Mrgprb9-ps, Mrgprb3, EG639116, Zdhhc13, Csrp3, E2f8, LOC100040465, 9130015G15Rik
Downstream geneDbx1, Htatip2, Prmt3, Slc6a5, Nell1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341L06.T7 (MSMg01no341_l06.b1)MSMg01-341L06.TJ (MSMg01no341_l06.g1)
ACCAG455434AG455435
length768757
length of high quality
(start - end)		418 (45 - 462)379 (75 - 453)
definitionCHROMAT_FILE: MSMg01no341_l06.b1 PHD_FILE: MSMg01no341_l06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:01 2005CHROMAT_FILE: MSMg01no341_l06.g1 PHD_FILE: MSMg01no341_l06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCTTTGTAGACCAGGCTAGCATCAAACTCAAAGAGATCTACCTGCT
TCTGCCTCCCAAGTGCTGGGATTAAAAGTGTGTGCCATCACCAGCTGGCT
TGTTTTGGGTTTTTAGGACAGTCTGGCCTGGATCTCAGTATACAACCAAA
GGTGACCTTGAACTTGTGATATCCCTGGCCCTACACCTCAGAGGCTGGGC
TTGGAAGCATGCCCCTCCATACTTCATTTATATGGCCAGAGATTGAATCC
CTGCTTCTTGCATGTTAGGCATGCACTCTCCCAATAAGCATGTTACCAAC
AAAGACATCTCTGACAACATTATTTTGTTTCAACACTTTTTTTTTTTTTT
TTTTTTTTTTTGGTAAATGGAGTCTCACTATGTCTAACTTTGCTTGATAA
TCTCTAAATGGACCAAGCTGACATCCCATATTATACATCTACAGGCTTTG
TTTGGGATTAAAGGAGTGGCTATCCACCCGGACTCGTTTTAACTTCTTTT
AATTTATAACCCATATTACTCACATCCGTCCTTTCGAACCAGCCTTCCCC
TCCTCTTACCCGTTTCGATCCGCCTATTCCCCCCTGTTTTACCTTTTTTT
TTTTTCCCCTTTTTTTTCTTTTTGTATTCCCTTCTCTCCCCCCTTTTATT
TTTTTTTCCCTTTCTTTTTCCCCTTTCTTTTTATTTTCCCCCACTTTTCT
TTTCGCTTTATTTTTTCC

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGGGGTAGTGCCATGGGGCACAAGA
GACATGACATTGCATCCTAATGGCCTGTTGGTCAGCAAACAGTCACAAAG
TGTCTCCTGGTGAGCTACGGCAGGTGAGTAGCAAGCAGCAAGAAGTGGTC
TCTCCTCACAGGACAGTCAGGTGTGTGGGCAAGAGACCAGAGGACAGGAC
GCTAGGACTCGGGAGCCCACCCTTCCCCCAGGAAGGTCATATCTGAGGCC
TCAAGTGTCTGCCCTTGTCCTGCTGTTCTGTGGTAAAAGGCATGGCTTGG
AAGAGCCCAGGGTATGGCAGAACTCATAGGCATGGAGGACAGTTCAGGCC
TGGGATAAGTCTCCTGCTTTTTCTACCTCCTAGATTGCTGCTTCTGGGAT
CAGTCTCAGAGTACAGCTTTCTGAAGGAAAAGATCCAAGGCTGTCAGCTT
TGATGGCAGTTCCCTCCTGGCTGCTCTAGTATTTTTTGTAAAGAATTGTT
GTTTTTTCACCTTATCGTTCATTGGAACTTGTACGTTACTTGGTTATTTT
TTCTTTTTTCCCCTCTTTTTTCTTTCCTTTCCCTTTTCTCTTTTATTTAT
CCCCCTTTTTTTTTCTCTTTCCCCCTTTTCCCCTTTTATTTTCCATTCTT
ATCCATTATTAACTCTCTTTTATTCCCTTTCTCTCCTCTTTCCCTTCTTT
CTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_l06.g1 MSMg01no341_l06.g1 CHROMAT_FILE:
MSMg01no341_l06.g1 PHD_FILE: MSMg01no341_l06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:01 2005
         (379 letters)



>mm_chr7_56629908_56630686
          Length = 779

 Score =  710 bits (367), Expect = 0.0
 Identities = 376/379 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggggtagtgccatggggcacaagagacatgacattgcatcctaatggcctgttggtca 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 caggggtagtgccatggggcacaagagacatgacattgcatcctaatggcctgtcggtca 260

                                                                       
Query: 61  gcaaacagtcacaaagtgtctcctggtgagctacggcaggtgagtagcaagcagcaagaa 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 gcaaacagtcacaaagtgtctcctggtgagctacggcaggtgagtaacaagcagcaagaa 320

                                                                       
Query: 121 gtggtctctcctcacaggacagtcaggtgtgtgggcaagagaccagaggacaggacgcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtggtctctcctcacaggacagtcaggtgtgtgggcaagagaccagaggacaggacgcta 380

                                                                       
Query: 181 ggactcgggagcccacccttcccccaggaaggtcatatctgaggcctcaagtgtctgccc 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 ggactcgggagcccacccttcccccaggaaggtcatatctgaggcctcaagtgtctgctc 440

                                                                       
Query: 241 ttgtcctgctgttctgtggtaaaaggcatggcttggaagagcccagggtatggcagaact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgtcctgctgttctgtggtaaaaggcatggcttggaagagcccagggtatggcagaact 500

                                                                       
Query: 301 cataggcatggaggacagttcaggcctgggataagtctcctgctttttctacctcctaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cataggcatggaggacagttcaggcctgggataagtctcctgctttttctacctcctaga 560

                              
Query: 361 ttgctgcttctgggatcag 379
           |||||||||||||||||||
Sbjct: 561 ttgctgcttctgggatcag 579


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space:   284900
Effective search space used:   284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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