BAC Information

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BAC

Clone NameMSMg01-341M02
Chromosome7 (Build37)
Map Location 56,854,050 - 57,043,305
singlet/doubletdoublet
Overlap geneDbx1, Htatip2, Prmt3
Upstream geneMrgprb3, EG639116, Zdhhc13, Csrp3, E2f8, LOC100040465, 9130015G15Rik, 5330421F07Rik
Downstream geneSlc6a5, Nell1, 4933405O20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341M02.T7 (MSMg01no341_m02.b1)MSMg01-341M02.TJ (MSMg01no341_m02.g1)
ACCAG455472AG455473
length769756
length of high quality
(start - end)		451 (47 - 497)373 (75 - 447)
definitionCHROMAT_FILE: MSMg01no341_m02.b1 PHD_FILE: MSMg01no341_m02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:05 2005CHROMAT_FILE: MSMg01no341_m02.g1 PHD_FILE: MSMg01no341_m02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,042,858 - 57,043,305)(56,854,050 - 56,854,422)
sequence
GTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTTCTCATATGGACATGACCACTATGACTATTAAAACTGAACAG
ATTCAAGTATCAGGTCTGACCACATTTGGAAACATTTCTATATTATCAAT
GATTTTGTGGGTTTTAAGTCATGACACAAATCCTGTGAAAACTGTTTTAA
ATTAAACTTTGTAATTTTGTAATTGTAAACTTTGTGCAAACCAAGTCAGC
ATTGCTATTTTAAAAACTAAAATAGTTTCTTTTCCATTAAAGAAACTAGG
CCTGTCATTTAATCACTACTTAACATGGTAGATGTTCCAGGGAAGACCAG
AGCCATCAAGCAGTTGTTTTTTCCAGTGCTCAATTTCAAGGAAAAAGTGG
CTTGATAAGACAGATTAATACTGATGTAAATAGGATTTACAGGGTCTTGA
CACCTCTGTAATCTTCTCATCTTGGGAGCGTGGGAGCATATGTGTGTCTT
CTCCCCCCCATCTCCCCCCTTTCCGTTTCCCCCCCTTCCTTCCTTTTTGT
TTCCCCCCCTTTTCCCTCTTTGCCCGGCCTCTTTTTTCCTTACATCTTCC
TCTCCTACTTCCCCCTTCCTTTTTCCCCCCTTCTCTATTCCCCTCTTTCC
TTCCTTTCTCCCTTTCCTCTTCTTTCCCCTCCTCTTCTTTTTTTCCGTTT
TCCCCTTATCCCACCCTTTTTCCCTCATACGTATACTTTCCTTTCCCTTA
ATCCCCCATATTCCCCCTN

GAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGTATCCCTTTTACGAGGGAAGCTTA
CACTGGGGAGCCCACCCTGCCCCATTTCAGTTGTGATGTATCTCACTGTG
GTCCCCAGGTCCCCGGCTCTTCCTGTCATGTCCCATTGATGTGGATGGTT
CCAGAGTGTGGTTCACTGACCTGTGGAACTACTCCATAATCCCCTACCTC
CTGGAAGCTGTCAGAGAAGGACTCCAGGTGAGAAGCATGCTCCTTTTGGC
TTCCTCAGACTTGAGTGCCCCGTGCTCTCCTGCGTGGTCTTCCGAATGGC
ACACGGTGGAAACGACAGCTGCTCGAAAGTCTTGGCTCAGCTGCTCATTA
GCACTGTGACTCCCGGGCAAAGCGTTTCACCGTCTCTGTCTTATCGGTAG
GGGATATAACAGCATTACTCTGCCACAGAGAGTTGTAAGGATCATACGAA
CCTATTGTTATCAAGCTTCCAGCGGTGGCAATGTTCAATACATTACACCA
CCCACGTGCGTTTCGAATTCGTTTATCTGACCTATGCCTCTCACCGTTTC
TTCTACCTTTTTTCCTTTCGTTCGCCTCTCTTTTTTTTTATTTTTTCTCC
CGCGTTGATTTATTCTCTTCTTCCTTACCTTTTTCCTTCCACCTTCTGTC
TTATTTTCTTTCTCTCCCTCTTTTTTTCTTTTAATCCCCCCCCTTTCTTT
CCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_m02.b1 MSMg01no341_m02.b1 CHROMAT_FILE:
MSMg01no341_m02.b1 PHD_FILE: MSMg01no341_m02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:05 2005
         (451 letters)



>mm_chr7_57042655_57043505
          Length = 851

 Score =  859 bits (444), Expect = 0.0
 Identities = 447/448 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccttctcatatggacatgaccactatgactattaaaactgaacagattcaagta 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 ggaattccttctcatatggacatgaccactatgactattaaaactgaacagattcaagta 592

                                                                       
Query: 64  tcaggtctgaccacatttggaaacatttctatattatcaatgattttgtgggttttaagt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 tcaggtctgaccacatttggaaacatttctatattatcaatgattttgtgggttttaagt 532

                                                                       
Query: 124 catgacacaaatcctgtgaaaactgttttaaattaaactttgtaattttgtaattgtaaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 catgacacaaatcctgtgaaaactgttttaaattaaactttgtaattttgtaattgtaaa 472

                                                                       
Query: 184 ctttgtgcaaaccaagtcagcattgctattttaaaaactaaaatagtttcttttccatta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 ctttgtgcaaaccaagtcagcattgctattttaaaaactaaaatagtttcttttccatta 412

                                                                       
Query: 244 aagaaactaggcctgtcatttaatcactacttaacatggtagatgttccagggaagacca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 aagaaactaggcctgtcatttaatcactacttaacatggtagatgttccagggaagacca 352

                                                                       
Query: 304 gagccatcaagcagttgttttttccagtgctcaatttcaaggaaaaagtggcttgataag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 gagccatcaagcagttgttttttccagtgctcaatttcaaggaaaaagtggcttgataag 292

                                                                       
Query: 364 acagattaatactgatgtaaataggatttacagggtcttgacacctctgtaatcttctca 423
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 291 acagattaatactgatgtaaataggatttacagggccttgacacctctgtaatcttctca 232

                                       
Query: 424 tcttgggagcgtgggagcatatgtgtgt 451
           ||||||||||||||||||||||||||||
Sbjct: 231 tcttgggagcgtgggagcatatgtgtgt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space:   370881
Effective search space used:   370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no341_m02.g1 MSMg01no341_m02.g1 CHROMAT_FILE:
MSMg01no341_m02.g1 PHD_FILE: MSMg01no341_m02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:05 2005
         (373 letters)



>mm_chr7_56853850_56854622
          Length = 773

 Score =  667 bits (345), Expect = 0.0
 Identities = 366/373 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtatcccttttacgagggaagcttacactggggagcccaccctgccccatttcagttgt 60
           ||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 agtattccttttatgagggaagcttacaatggggagcccaccctgccccatttcagttgt 260

                                                                       
Query: 61  gatgtatctcactgtggtccccaggtccccggctcttcctgtcatgtcccattgatgtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatgtatctcactgtggtccccaggtccccggctcttcctgtcatgtcccattgatgtgg 320

                                                                       
Query: 121 atggttccagagtgtggttcactgacctgtggaactactccataatcccctacctcctgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atggttccagagtgtggttcactgacctgtggaactactccataatcccctacctcctgg 380

                                                                       
Query: 181 aagctgtcagagaaggactccaggtgagaagcatgctccttttggcttcctcagacttga 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 aagctgtcagagaaggactccaggtgagaagcatgctccttttgacttcctcagacttga 440

                                                                       
Query: 241 gtgccccgtgctctcctgcgtggtcttccgaatggcacacggtggaaacgacagctgctc 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 441 gtgccccatgctctcctgcgtggtcttccgaatggcacacggtggaaacgacagctgctt 500

                                                                       
Query: 301 gaaagtcttggctcagctgctcattagcactgtgactcccgggcaaagcgtttcaccgtc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaagtcttggctcagctgctcattagcactgtgactcccgggcaaagcgtttcaccgtc 560

                        
Query: 361 tctgtcttatcgg 373
           |||| ||||||||
Sbjct: 561 tctgccttatcgg 573


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space:   278096
Effective search space used:   278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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