BAC Information

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BAC

Clone NameMSMg01-341O16
Chromosome7 (Build37)
Map Location 123,110,207 - 123,110,603
singlet/doubletsinglet
Overlap geneSox6
Upstream geneLOC668472, LOC100042779
Downstream gene1110006G14Rik, EG668479, LOC100043313, 1110004F10Rik, Plekha7, Rps13, Pik3c2a, LOC100042798, Nucb2, LOC100043320, EG668484, LOC668485, LOC546993, LOC100043330
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341O16.T7 (MSMg01no341_o16.b1)MSMg01-341O16.TJ (MSMg01no341_o16.g1)
ACCAG455594AG455595
length762769
length of high quality
(start - end)		382 (41 - 422)396 (70 - 465)
definitionCHROMAT_FILE: MSMg01no341_o16.b1 PHD_FILE: MSMg01no341_o16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:17 2005CHROMAT_FILE: MSMg01no341_o16.g1 PHD_FILE: MSMg01no341_o16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TGATGTCTACCTGGGGGCGTAACTTGGGGTAAAGTACTTGTCTAGTACAC
ATGAGGCCCTGGGTTCCACTTCCAACACTGTAATAAAAATAAAACTTGGT
TGGCTTGGGATCTACACACCTGGTGGGGGAGACCGTGTTTTCTTTCTTCG
CATTTCTTTAACGTGCCTGTGTGCATGTGTGTGTGGAGGTGTGTGTGCAT
ATGTTAAGGCCTGCATTTGGAGGTCTGCAGGGTTGGTTCTCTCCTTCCAC
CCTAAGGCTCCCAGGTACTAAGCTCAGGTCGTCAGGCTCAGTGACAGCAC
TGCACACTGTGCCATCTCAAGGCCTGACAGACTGTAGACAGCACTGCTTG
TGAGCATCTGGATCCTCTGGGTAAGCGGAGACATTTACCTACCTGCACCC
AATTATGGAGCTGAAGTCTGAGGAAATTCTGCTGGAAATACTGCCTAGAA
CTTACTACTGATACGACCGCCTACTCCCACCTTCCCCTGTCATACAATTC
GTTGCTGTATTTTCCCCCCATTATACCTCTTCCCCCTCCATTTCTCTTCT
TTTTCTCCTTCACACCTTCTTACCACTTTTTTTTCCACCTTCCCTTTCGC
TTCTTTCCTCCTTCACTCTTTCCCCATCTTCCCACCCCTATTTATTTCCT
TCTCCCTTATCGCGCTTTATTCCTTTCCTTATCTTTCCTTATCCATTCCC
CCTTTTCCCTTG

AATGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTGGTGTAGTCAGTGCACTATAGAGGTGAAC
CAGTAAAAGGTGACTCAGCCAAGCTTGGGAAGGGACATCTGATGGCCTCC
ACCTGAAAGAGCTACCTTAAGGGAGAAAGACTAAGCTACTAAAACCTAAA
AACACAGGAACTTAACCAGGTTCCAAAATAACCTTCCCAGACAACCATGG
CTTCTCCATCACTCTGTTTTTCTCAGAACAGCTGTCTAAAATGAGTTCCT
TACATTAAAGACAAAAGGGAGAAGATTAAGGTTCTGAACTGTGCCTCTGA
AAAACCTATTATGAGTGTCTCACCATCGTCAGAATACATTCAGGGGAAAG
CAAGCAAGGGAAATCGGAACTCAGCAAAGCATCATACTGCAAAATGTCTC
ATTTTCAGAACTGCAGATTGCACATGTGGTCTTTTTTTGTCCCAACTTCT
GTGAACCAAATGCTTGTCTAAGGACAACAAAACCATCATCTTCTAAATGA
CGTGCGCCAGCGAAGTATGTTGTTCCCGTATTAACAATAAGTGGTTACAA
GAGTATCTTGCGCTACCATATTCCTATTTGCAAATTCCCTCCTCTCCCGG
AATAAAAATTCCACCTCCCCGCCGAACGATATTTTATATCCCGTGCAAAA
TTACTCGCCCTTCTTTTTTTTTTCCTTTCCCCCCCCTTTTTATCTTGTTT
TCACCCCTTTTTTCCCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_o16.g1 MSMg01no341_o16.g1 CHROMAT_FILE:
MSMg01no341_o16.g1 PHD_FILE: MSMg01no341_o16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:17 2005
         (396 letters)



>mm_chr7_123110007_123110803
          Length = 797

 Score =  760 bits (393), Expect = 0.0
 Identities = 396/397 (99%), Gaps = 1/397 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctggtgtagtcagtgcactatagaggtgaaccagtaaaaggtgactcagccaagcttggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctggtgtagtcagtgcactatagaggtgaaccagtaaaaggtgactcagccaagcttggg 260

                                                                       
Query: 61  aagggacatctgatggcctccacctgaaagagctaccttaagggagaaagactaagctac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagggacatctgatggcctccacctgaaagagctaccttaagggagaaagactaagctac 320

                                                                       
Query: 121 taaaacctaaaaacacaggaacttaaccaggttccaaaataaccttcccagacaaccatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaaacctaaaaacacaggaacttaaccaggttccaaaataaccttcccagacaaccatg 380

                                                                       
Query: 181 gcttctccatcactctgtttttctcagaacagctgtctaaaatgagttccttacattaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcttctccatcactctgtttttctcagaacagctgtctaaaatgagttccttacattaaa 440

                                                                       
Query: 241 gacaaaagggagaagattaaggttctgaactgtgcctctgaaaaacctattatgagtgtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gacaaaagggagaagattaaggttctgaactgtgcctctgaaaaacctattatgagtgtc 500

                                                                       
Query: 301 tcaccatcgtcagaatacattcagggg-aaagcaagcaagggaaatcggaactcagcaaa 359
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 tcaccatcgtcagaatacattcagggggaaagcaagcaagggaaatcggaactcagcaaa 560

                                                
Query: 360 gcatcatactgcaaaatgtctcattttcagaactgca 396
           |||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcatcatactgcaaaatgtctcattttcagaactgca 597


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 797
Length adjustment: 9
Effective length of query: 387
Effective length of database: 788
Effective search space:   304956
Effective search space used:   304956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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