BAC Information

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BAC

Clone NameMSMg01-342M17
Chromosome7 (Build37)
Map Location 107,905,134 - 107,905,505
singlet/doubletsinglet
Overlap geneB930006L02Rik, LOC100041204
Upstream geneOlfr521, Neu3, Spcs2, Xrra1, EG330602, Chrdl2, Pold3, 2610209A20Rik, Kcne3, LOC631577, Pgm2l1, Gpx2-ps1, P4ha3, Ppme1, AU020772, Ucp3, Ucp2, Dnajb13, LOC667112, Chchd8, Mrpl48, LOC100041155, Rab6, LOC100041167, Plekhb1
Downstream geneTnfrsf19l, Arhgef17, P2ry6, P2ry2, LOC100049539, EG435996, Fchsd2, EG622673, Atg16l2, Stard10, Centd2, Pde2a, Art2a, EG630138, Art2b, Clpb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-342M17.T7 (MSMg01no342_m17.b1)MSMg01-342M17.TJ (MSMg01no342_m17.g1)
ACCAG456260AG456261
length748768
length of high quality
(start - end)		393 (34 - 426)372 (64 - 435)
definitionCHROMAT_FILE: MSMg01no342_m17.b1 PHD_FILE: MSMg01no342_m17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:24 2005CHROMAT_FILE: MSMg01no342_m17.g1 PHD_FILE: MSMg01no342_m17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGCGCGGAATTCAAGGCTTG
CCTGGACTGCGTAGTGAAACTGTCGTAAAAAGGAGATGGGGATTGGAGAG
ATGCATTTAAGAGCATTTGTTTTGCAGAAGACCTAGGCTTGGTCACAACT
ATCCATAACTGAAGTTTCAGGGGAGCCAATGCCTTCTAACCTAGTGCACT
AGACCATGGGCACTAGGTATGTACATGGTTTCCATACATGCAAATGAAAT
ATTCATGCACATAAAATAAATCTAAAACAAATACTTAGGGGATAAAAGGC
ACCAAAAAGGTCTGTGTGTGGTGGTGAATTTCTTTAATCCCGGCAAGTGA
AGAGGCAGACAAGTGGGTTTTGGTGAGATTGAGGCCAATTTGGTCTACAT
AGTGAATTTTAGGTCAACCAGGTGTACATAGTGAGGTCTTACCTCAAAGT
ACAAAAAATGAAGGAGTGGGGTTCTTACCTTGCATGTGGGATGATCTGGA
ACTTCCTCTTTCCCCCTGTACCCGTGACAGCAAGCAATTCTTTACCAATT
AGTTTGCCTCTACCAATTTATGTTTCTATCCCGCTGGATTAATTCCCCCT
ATTTCCACCCGCCTATCTAGTATTATTATTTCTCCCCCTTCCGCTACCTA
TTTCGTGCTTTTGCTTCCCCCGCTGTTTACACTTTCTCTCCTTATTATTT
CCTCCGCCCCTGCCCCTCCTTCTTTTTTACTACCTTTTTCCTACCCCN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCATGTGCTTTGAATCACAGGACTCTAGAACATTAGTG
GAATGATGTAATTGTTACATATTAGAAAAAGAAACTTTATAATCAGGCAG
TCCTGAATTCAAATCTCCAATTGACAATGATCATATTGTCAAATGATCAA
ATGACTTTGGAAGTCTTGAAACTTTTTTAACCCCCTCATCTGAAAAATGC
ACCTAAGAATATAAATGGCAAAGTGATGGGGCTGGAGAGGTGGCTCAGCG
TGCACATTGCTTTTCCAGAGAACCCACATTCCCACATGGTTCCCAGCACC
CACATCACACAGGTCACAACCACCTGTAATTTCAGTTCCAGGAGATCTAT
GGACTCTGGCCTCCACAGGCACCTGCACTAACACATGTGGGTTGCATACA
CATCATTAATAAAGTAAATCTTTTTTAAAAGGAACATAGGTGACACCAAC
TTGTTATGGTTAACTCACCAAATAAGTCAATAAAAATGCTTTTTTACAAC
TATTAATAATTTTCCCACAAAATGGGGGAAAACTATAAAATGGACCATTC
AAACCTTCTCCCCCTTCATCCATCCCCAAAATCCAAGAATTTTCGTTTTA
CCCACCACCCCTCATACTCCAATACCCAACGTCCCCTTATCCTCCCGTTC
TTCCGCTTCTCTTTTAACCCCCTCTATTATATAACACACTCCACCCGCGT
CTTCTTATTTTTTTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no342_m17.g1 MSMg01no342_m17.g1 CHROMAT_FILE:
MSMg01no342_m17.g1 PHD_FILE: MSMg01no342_m17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:25 2005
         (372 letters)



>mm_chr7_107905092_107905863
          Length = 772

 Score =  712 bits (368), Expect = 0.0
 Identities = 371/372 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgtgctttgaatcacaggactctagaacattagtggaatgatgtaattgttacatatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 catgtgctttgaatcacaggactctagaacattagtggaatgatgtaattgttacatatt 355

                                                                       
Query: 61  agaaaaagaaactttataatcaggcagtcctgaattcaaatctccaattgacaatgatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 agaaaaagaaactttataatcaggcagtcctgaattcaaatctccaattgacaatgatca 295

                                                                       
Query: 121 tattgtcaaatgatcaaatgactttggaagtcttgaaacttttttaaccccctcatctga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 tattgtcaaatgatcaaatgactttggaagtcttgaaacttttttaaccccctcatctga 235

                                                                       
Query: 181 aaaatgcacctaagaatataaatggcaaagtgatggggctggagaggtggctcagcgtgc 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 aaaatgcacataagaatataaatggcaaagtgatggggctggagaggtggctcagcgtgc 175

                                                                       
Query: 241 acattgcttttccagagaacccacattcccacatggttcccagcacccacatcacacagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 acattgcttttccagagaacccacattcccacatggttcccagcacccacatcacacagg 115

                                                                       
Query: 301 tcacaaccacctgtaatttcagttccaggagatctatggactctggcctccacaggcacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 tcacaaccacctgtaatttcagttccaggagatctatggactctggcctccacaggcacc 55

                       
Query: 361 tgcactaacaca 372
           ||||||||||||
Sbjct: 54  tgcactaacaca 43


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space:   276969
Effective search space used:   276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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