BAC Information

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BAC

Clone NameMSMg01-347J11
Chromosome7 (Build37)
Map Location 25,438,082 - 25,611,612
singlet/doubletdoublet
Overlap geneLOC100043706, Tex101, Gm1096, BC049730, EG210155, Cd177, Ceacam10, EG545936
Upstream geneV1rd9, EG545934, V1rd22, LOC384573, EG622222, LOC546943, V1rd12, V1rd13, V1rd17, LOC100043121, V1rd16, LOC384575, V1rd20, V1rd18, V1rd15, EG622446, Zfp180, Zfp112, Zfp235, Zfp114, Zfp111, Zfp109, Zfp108, Zfp93, LOC100043690, Zfp61, LOC100043691, Zfp94, 1700008P20Rik, Lypd5, Kcnn4, 1500002O20Rik, Irgc1, Plaur, Cadm4, Zfp428, Irgq, 2310033E01Rik, Xrcc1, Zfp575, Ethe1, LOC100043138, EG232970, Lypd3
Downstream geneLOC100043712, Lypd4, Dmrtc2, Rps19, Cd79a, Arhgef1, EG232974, Rabac1, Atp1a3, Grik5, Zfp574, Pou2f2, Dedd2, Zfp526, Gsk3a, 9130221H12Rik, Erf, Cic, Pafah1b3, EG623131, Tmem145, Megf8, Cnfn, Lipe, BC024561, LOC434148, Ceacam1, Ceacam2, LOC100043722, EG632778, 2310004L02Rik, B3gnt8, Bckdha, Exosc5, A830041P22Rik, BC028440, Tgfb1, Ccdc97, Hnrpul1, Axl, LOC667950, Cyp2s1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-347J11.T7 (MSMg01no347_j11.b1)MSMg01-347J11.TJ (MSMg01no347_j11.g1)
ACCAG459896AG459897
length785780
length of high quality
(start - end)
437 (77 - 513)356 (74 - 429)
definitionCHROMAT_FILE: MSMg01no347_j11.b1 PHD_FILE: MSMg01no347_j11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:37 2005CHROMAT_FILE: MSMg01no347_j11.g1 PHD_FILE: MSMg01no347_j11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,438,082 - 25,438,517)(25,611,257 - 25,611,612)
sequence
NNCCCCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCATAGCATCTCCCCACCTCAGCCTCCCAAATGCTGGGCTTAT
AAGGTGTGTGTCAGCATGCCTGGCTTTACAGTGAAAAGAACAACAAATTA
AGACAGGGTGTCCTGTAACCCAGGCTGGTCTTGCTGCCTACATATTGAAG
GCTATCTTGAAATTTTCTTTGCCTCTGCCTCTCAAGTACTAAGGTGACAT
AGTTCTGGGTTTATGTGGTACTAGGGATGGGACGTAGGATGCTAAGCAAG
TACTCTAACACTGAGCCACGCCCCCTTCCCCTCACTGAAGGATTCTAGGC
GGGTCTCTACTTTCCCAGCTATTTCCTAAAGTCCCTTCCTCCAGCCCAAA
CCAGAGCTCCTTTGCTGAAACCCTCTCTGAAAACTCTTGGGTTCTTTCAA
TGGCTACCTTTCAGGCCTGGATGATAAAGGCTGCTAATCTTTCCAGTTCT
AGTGCTTCTCCACGCATTGTGGCTTCCTGATCCACTGTTTCTGCTCTTGT
CCGCTGCCTCTTTCTTAAAATCAACCCAATGACTCAGCGTGAAACTGTTT
GTCTTTTCCCTGGTTACCTGCCTCACAATTATCCTTTTGTTCCCGTACTA
TAAAANNNNAATNTGTTGAACTGCCCGCCACTGCCCTTCCCNCGCNCCCC
CCCTATCACTTTCCACTTATCGTACTTTATCCCTATTCCCATAATTTCTC
TCACCGCCATTTTTTTCTCTCCATCCTTTTCCCCC
ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGGGTTTTCCATTGATATTCCAGGAA
TAGTGTGCTTTGGGGTGAGACACTGTTTGGCAGGAGATCCACATGCTCTT
GCCTTCCTCGAAGTATTTGTTTGGGGGAAATATTTCGGGGGTATCTGGGC
CATCTGGGGGAAAGAGAAAGACGTGATGCCATAAAGGACACAGAAAGATC
CTGTTCTGAAGAAGGTCAGTGTGTCCCTGAGCAGGGTGACAATCTTGCCT
TACAATTGTGACAGGCAGGGCTGGCCCTTGGATAAGTCATAAAGCAGTTT
CCTCTGAGGGCTTCAGGTCCCTCTCTAACATTCCACAAACACACACAGAG
GATTCCACTCACACCGTGTCAATTAAAAAAACTCAAACATGTGTCATGCC
CTGCTTTCTGTCACTAGCACTGATCCTCAGCCCCTTTACTGTCTGTCTAA
AGTGTCTTGGTCTGCCAGGATGTATACCATTGTAGCAGACTTTTTGTCCA
GCCTGGTTCAGGGTCAAGATTCATTGTTTTGTTCGTGCACCGCACGCGTA
TTTGTCTTTCTGCCCCCCATCCCCATATTTATTCTTTCTCTCCTCTTTTT
CTTTTTTTGTTTTTTCTCCCCCCTTTTTTTTTCTCTTCCTCTTCCTTCTA
TTTCTCATTTTTATCCCCCCCTCTTTAAAACTTTTTTTTCCCTTTCTCCT
TTTTCCCCCCCTCTCTCTCTCTTCTTTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no347_j11.b1 MSMg01no347_j11.b1 CHROMAT_FILE:
MSMg01no347_j11.b1 PHD_FILE: MSMg01no347_j11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:37 2005
         (437 letters)



>mm_chr7_25437882_25438718
          Length = 837

 Score =  820 bits (424), Expect = 0.0
 Identities = 433/436 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagcctcccaaatgctgggcttataaggtgtgtgtcagcatgcctggctttacagtgaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagcctcccaaatgctgggcttataaggtgtgtgtcagcatgcctggctttacagtgaaa 260

                                                                       
Query: 61  agaacaacaaattaagacagggtgtcctgtaacccaggctggtcttgctgcctacatatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaacaacaaattaagacagggtgtcctgtaacccaggctggtcttgctgcctacatatt 320

                                                                       
Query: 121 gaaggctatcttgaaattttctttgcctctgcctctcaagtactaaggtgacatagttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaggctatcttgaaattttctttgcctctgcctctcaagtactaaggtgacatagttct 380

                                                                       
Query: 181 gggtttatgtggtactagggatgggacgtaggatgctaagcaagtactctaacactgagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggtttatgtggtactagggatgggacgtaggatgctaagcaagtactctaacactgagc 440

                                                                       
Query: 241 cacgcccccttcccctcactgaaggattctaggcgggtctctactttcccagctatttcc 300
           ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacgcccccatcccctcactggaggattctaggcgggtctctactttcccagctatttcc 500

                                                                       
Query: 301 taaagtcccttcctccagcccaaaccagagctcctttgctgaaaccctctctgaaaactc 360
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 501 taaagtcccttcctccagcccaaaccagagctcctttgttgaaaccctctctgaaaactc 560

                                                                       
Query: 361 ttgggttctttcaatggctacctttcaggcctggatgataaaggctgctaatctttccag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgggttctttcaatggctacctttcaggcctggatgataaaggctgctaatctttccag 620

                           
Query: 421 ttctagtgcttctcca 436
           ||||||||||||||||
Sbjct: 621 ttctagtgcttctcca 636


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space:   354384
Effective search space used:   354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no347_j11.g1 MSMg01no347_j11.g1 CHROMAT_FILE:
MSMg01no347_j11.g1 PHD_FILE: MSMg01no347_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:37 2005
         (356 letters)



>mm_chr7_25611057_25611812
          Length = 756

 Score =  665 bits (344), Expect = 0.0
 Identities = 353/356 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagggttttccattgatattccaggaatagtgtgctttggggtgagacactgtttggcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 cagggttttccattgatattccaggaatagtgtgctttggggtgagacactgtttggcag 497

                                                                       
Query: 61  gagatccacatgctcttgccttcctcgaagtatttgtttgggggaaatatttcgggggta 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 496 gagatccacatgctcttgccttcctcaaagtatttgtttgggggaaatatttcgggggta 437

                                                                       
Query: 121 tctgggccatctgggggaaagagaaagacgtgatgccataaaggacacagaaagatcctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tctgggccatctgggggaaagagaaagacgtgatgccataaaggacacagaaagatcctg 377

                                                                       
Query: 181 ttctgaagaaggtcagtgtgtccctgagcagggtgacaatcttgccttacaattgtgaca 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 376 ttctgaagaaggtcagtgtgtccctgagcagggtgacaaccttgccttacaattgtgaca 317

                                                                       
Query: 241 ggcagggctggcccttggataagtcataaagcagtttcctctgagggcttcaggtccctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ggcagggctggcccttggataagtcataaagcagtttcctctgagggcttcaggtccctc 257

                                                                   
Query: 301 tctaacattccacaaacacacacagaggattccactcacaccgtgtcaattaaaaa 356
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 256 tctaacattccacaaacacacacagaggattccactcacaccctgtcaattaaaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 756
Length adjustment: 9
Effective length of query: 347
Effective length of database: 747
Effective search space:   259209
Effective search space used:   259209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)