BAC Information

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BAC

Clone NameMSMg01-350N14
Chromosome7 (Build37)
Map Location 67,326,819 - 67,327,122
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668815, EG668818, Ube3a, LOC100040985, LOC100041010, LOC100041029, LOC100041051, Pwcr1, LOC664788, Snrpn, Snurf, EG664849
Downstream geneLOC100041201, LOC100041211, LOC664896, LOC100041229, LOC625287, D0Kist2, LOC100041248
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-350N14.T7 (MSMg01no350_n14.b1)MSMg01-350N14.TJ (MSMg01no350_n14.g1)
ACCAG462363AG462364
length758736
length of high quality
(start - end)
425 (54 - 478)416 (88 - 503)
definitionCHROMAT_FILE: MSMg01no350_n14.b1 PHD_FILE: MSMg01no350_n14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:55 2005CHROMAT_FILE: MSMg01no350_n14.g1 PHD_FILE: MSMg01no350_n14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTTTCTAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCATTCTTTTTCATAGCTGAGTAGTACTCCATTGTGTAA
ATGTACCACATTTTCTGTATCCATTCCTCTGTTGAGGGACATCTGGGTTC
TCTCCAGCTTCTGGCTATTATAAGTAAGGCATTTTTATTATTATATGATT
GTAAAACTGTAAGAGACAAAGTGTAGAACACCGTGGTATGAATGAGATGC
CCACTATTGGTCTCCCATTTACAAATACTTGATTCCTACTTGATGTCAGT
TTGAGGAAGATTAGGAAATGCAGCATTGCTGGACAAAGGATCTCCCTGAG
GATAGTTTTCTATCTTTCAAAACACTTTTGATATGTCAAACACTTCTCTC
GGCTTTCTCTATGTTCTGAGACATAAGTTGCTACTTCAGCAAACTTCTGC
TTGCCAATCAAGACACAGAAAGACTGACAATAACCATTTTAATTTTATTA
ACATATATTTGCTTTTAATAAAGGATTCCCAAATATACTCCTGTCTGGAG
TTAAATTCAAGGCAAACTCTCTGCCCATGTCCCTAAAGAATTAAATTTAA
AAGCATGTGGCAACCTGAATTGTTATTTTTTTAACAAAAATTTTACTTGT
TTGCCTAATCCTAATCTTCTTTTCCCTCCTTACTTTTTCGCTCCATATTT
AGCTTTGTCCCCTAAAGGGCCTTTTTTCGCTCTCCCTACCTTTCCCTCCC
TCCCTTCC
NTTTTTTTTNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGGTACAGAAGT
GGTCTGGCTTGTTGTTCAATTTAACTCAAACTATGGTCAGCTGTGCAGAA
GGAACCTCAATTGAGAAAATGGCTCATCAAATTGGCAAGTTTGTGGTAGT
ATTTTCTTGATTAATGATTGATGCAGGAGGACTCAGGCCACTGTTTTTGC
CATCCCTAGGCATTTCTACCTGGGTTCTATTAGAAACAGGTTGAGCAGCT
AGGATGAGCAAGTCAATAAGCAGAGTTTCTCTGCACTATGTCCTGCTTTC
AAGTTCCTGACTTGAGTGTCTCAAAGAAAGAGAAAGTACAGACCCAATAA
ACCCTTTCCTCCCAAAGTCTTTTATTGTCAGTGTTTTATCAAAACAACAG
AAAGCTAACTAATAATAAGGTATAAATCCTCAGTTGTGGCAAATTCCATG
GAGATGGTTTGTGATGAGTGACATTATGACTGGTGAGTGTGCTTTCCATA
TCCCAGTCCTGGCTTACTCCTGGTGTATGCCAAATGTTTGGGTGTCTGGT
GTTTACATTACTTAGTTTCCTAACTTTTTAACACCGCCTCCCGGCCTATT
TTACTCTTCCCTATGAATTATATTCTAGCCTTTTTCCTTGTCCATATAAT
CATCATTCTTTTTTCTTTTTTCCTCTCTCCTCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no350_n14.b1 MSMg01no350_n14.b1 CHROMAT_FILE:
MSMg01no350_n14.b1 PHD_FILE: MSMg01no350_n14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:55 2005
         (425 letters)



>mm_chr7_67326298_67327122
          Length = 825

 Score =  528 bits (273), Expect = e-154
 Identities = 297/305 (97%), Gaps = 2/305 (0%)
 Strand = Plus / Minus

                                                                       
Query: 121 gtaaggcatttttattattatatgattgtaaaactgtaagagacaaagtgtagaacaccg 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 825 gtaaggcatttttattattatatgattgtaaaactgtgagagacaaagtgtagaacaccg 766

                                                                       
Query: 181 tggtatgaatgagatgcccactattggtctcccatttacaaatacttgattcctacttga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 tggtatgaatgagatgcccactattggtctcccatttacaaatacttgattcctacttga 706

                                                                       
Query: 241 tgtcagtttgaggaagattaggaaatgcagcattgctggacaaaggatctccctgaggat 300
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 705 tgtcagtttgaggaagattaggaaatgcagcattgctggacaaagtatctccctgaggat 646

                                                                       
Query: 301 agttttctatctttcaaaacacttttgatatgtcaaac-acttctctcggctttctctat 359
           |||||||||||||||||||| ||||||||||||||||| || |||||| ||||||||| |
Sbjct: 645 agttttctatctttcaaaactcttttgatatgtcaaacaac-tctctcagctttctctgt 587

                                                                       
Query: 360 gttctgagacataagttgctacttcagcaaacttctgcttgccaatcaagacacagaaag 419
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 586 gttctgagacataagttgctacttcagcaaacttctgcttgccactcaagacacagaaag 527

                
Query: 420 actga 424
           |||||
Sbjct: 526 actga 522


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 825
Length adjustment: 9
Effective length of query: 416
Effective length of database: 816
Effective search space:   339456
Effective search space used:   339456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)