BAC Information

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BAC

Clone NameMSMg01-351A23
Chromosome7 (Build37)
Map Location 69,323,653 - 69,323,958
singlet/doubletsinglet
Overlap genenone
Upstream geneD0Kist2, LOC100041259, EG664943, B230209E15Rik, EG620934, LOC100041293
Downstream geneNdn, Magel2, Mkrn3, Peg12, Atp5l-ps1, EG665038, LOC669222, LOC384631, LOC622243, EG622251, Chrna7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-351A23.T7 (MSMg01no351_a23.b1)MSMg01-351A23.TJ (MSMg01no351_a23.g1)
ACCAG462523AG462524
length749767
length of high quality
(start - end)		577 (55 - 631)436 (86 - 521)
definitionCHROMAT_FILE: MSMg01no351_a23.b1 PHD_FILE: MSMg01no351_a23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:13 2005CHROMAT_FILE: MSMg01no351_a23.g1 PHD_FILE: MSMg01no351_a23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNAATTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCAAATTGATCCATTCTTATCTCCTTGTACTAAGGCCA
AATCTAAGTAGATCAAAGAACTCCACATAAAACCAGAGACACTGAAACTT
ATAAAGGAGAAAGTGATGGAAATTCTCAAAGATATGGGCACAGGGTAAAA
ATTCCTGAATAAAACAGCCATGGCTTGTGCTGTAAGATCAAGAATCGACA
GATGGGACCTCATAAAATTGCAAAACTTCTGTAAGGCAAAAGACACTGTC
AATAAGAAAAAAAGGCCACCAACAGATTGGGAAAGGATCTTTACCTATCC
TAAATCAGATAGGGGACTAATATCCAATATATATATATACATATGTAAAG
AACTCAAGAATGTGGACTCCAGGAAATCAAATAACCCCATTAAAAATGGG
GCTCAGAGCTAAACAAAGAATTCTCACCTGAGGAATACTGAATGGCTGAG
AAGCACCTGATAAAATGTTCAGGATCCTTAATCATCATGGAAATGCAAAT
AAAAACAACCCTGAGATTCCACCTCACACCACTCAGAATGGCTAAGAGCA
AAAATTCACGTGACAGCAGATGCTGGTGAGGATGTGGAGAAAGAGCAACA
GTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGGAATC
AGTTTGGCAGNTTCTCCAAAAATGTATTACATACTACCAGAAGATCCCG

NNNNNNNNCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAAGCTACAGGACA
GTAGAGATAGACCTAGAACCTCTGAGAGAATTAAGTTTGAGGTACACTAC
GTATAATGCACAGTTGATTGGGTTGATAGTATTATGTTCAGAGCAAGAGC
TTTGAGACTGTAATGCACATTTGGTACCCTCACTGAGGCCCTTTGTTTAG
CAGAATCATTAAAAGCTTAAAAGTCCTTCAAATTTTATTTGGCATAACCC
AGCAAGTAACAAGTGTCTAAAAAGGAGATATTGTGCCCTGGAAGAGATAT
GGGAATGCATATGCAGAGGAAGAGAACTATTCTGTGTTCTTGAAGGAAAA
ATTTGATACACTTTTAGTGTAGCTAGAATTCCTAAGGAAAAATACTAAAG
CAAAACATAATTCTGTGGTAAAGAACTTTTGGAAGGCTTTAAAATCTTAC
AGAACTTCACAGAGGGTATACATAACAAAGCAATATAGGTGAAGAGAAGC
AAGCCTGTCCTGATTTGTGCAATTATGCTTTCAGATATCATGCTTTTCAT
GATTGTGCAATTCTGATTTCAGATAATTTCNNATTTCCATCCTAGAATTT
GGACATATGAGATGACTATCAGTGGGGGTCGGAACCGAGACTAAAAAGAA
ATTCTACTGAATGAAGTTGCTTGGTTTGTCGCCCCAAGAGACTTTATTGA
AGGATTGGTAGGAATGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no351_a23.g1 MSMg01no351_a23.g1 CHROMAT_FILE:
MSMg01no351_a23.g1 PHD_FILE: MSMg01no351_a23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:13 2005
         (436 letters)



>mm_chr7_69323653_69324488
          Length = 836

 Score =  555 bits (287), Expect = e-162
 Identities = 302/307 (98%), Gaps = 2/307 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaagctacaggacagtag-agatagacctagaacctctgagagaattaagtttgaggta 59
           ||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 306 agaagctgcaggacagtagaag-tagacctagaacctctgagagaattaagtttgaggta 248

                                                                       
Query: 60  cactacgtataatgcacagttgattgggttgatagtattatgttcagagcaagagctttg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 cactacgtataatgcacagttgattgggttgatagtattatgttcagagcaagagctttg 188

                                                                       
Query: 120 agactgtaatgcacatttggtaccctcactgaggccctttgtttagcagaatcattaaaa 179
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 187 agactgtaatgcacatttggtaccctcactgaggccctctgtttagcagaatcattaaaa 128

                                                                       
Query: 180 gcttaaaagtccttcaaattttatttggcataacccagcaagtaacaagtgtctaaaaag 239
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 gcttaaaagtccttcatattttatttggcataacccagcaagtaacaagtgtctaaaaag 68

                                                                       
Query: 240 gagatattgtgccctggaagagatatgggaatgcatatgcagaggaagagaactattctg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67  gagatattgtgccctggaagagatatgggaatgcatatgcagaggaagagaactattctg 8

                  
Query: 300 tgttctt 306
           |||||||
Sbjct: 7   tgttctt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space:   353129
Effective search space used:   353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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