Query= MSMg01no351_c05.b1 MSMg01no351_c05.b1 CHROMAT_FILE:
MSMg01no351_c05.b1 PHD_FILE: MSMg01no351_c05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:19 2005
(569 letters)
>mm_chr7_27620735_27621703
Length = 969
Score = 988 bits (511), Expect = 0.0
Identities = 557/583 (95%), Gaps = 17/583 (2%)
Strand = Plus / Plus
Query: 4 ggaattcagcgggcggtgcgagcaagctaccttcgactggcttttcaaaggctatggtga 63
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 ggaattcagcgggcggggcgagcaagctaccttcgactggcttttcaaaggctatggtga 246
Query: 64 gagggtcttgacacaggggaatgaggcagaggacatttgagagcatcattcccacccctg 123
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 247 gagggtcttgacacaggggaatgaggcagaggacatttgagagcatcgttcccacccctg 306
Query: 124 gtccccccacctctgacttttccacccctccaggctatcttctccccacgtccctgcctc 183
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ctccccccacctctgacttttccacccctccaggctatcttctccccacgtccctgcctc 366
Query: 184 ccactgtgtctagtctcagactcatctctctgactgtatttcttgattcccccacctcca 243
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 367 ccactgtgtctagtctcagactcatctctctgactctatttcttgattcccccacctcca 426
Query: 244 cccgtgcctcctcttccaccttgaaattcctctgtcggaatcctgcgcctctagcaggat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 cccgtgcctcctcttccaccttgaaattcctctgtcggaatcctgcgcctctagcaggat 486
Query: 304 ccgaagcttccctgtagcccacgccatcattttcagcttcggtgattgctttctctcttc 363
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 487 ccgaagcttccctgtagcccacgccatcattttcagctttggtgattgctttctctcatc 546
Query: 364 ctctcccttgctttctactatcag-----------------ttcccaggaactgtctccc 406
||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 547 ctctcccttgctttctactgtcagacatggcaggacctttgttcccaggaactgtctccc 606
Query: 407 agcaacaatgtctcctctctccagactctctttgggtctctctctttatttccgtctctt 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 agcaacaatgtctcctctctccagactctctttgggtctctctctttatttccgtctctt 666
Query: 467 ttgttgctcaattatacatctttctcaacaataatcgccaccagatctcttcagtctcct 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 ttgttgctcaattatacatctttctcaacaataatcgccaccagatctcttcagtctcct 726
Query: 527 gtctctcgcctctgtctctgcccttctgtctccctcttcttac 569
|||||||||||||||||||| || |||||||||||||||||||
Sbjct: 727 gtctctcgcctctgtctctgtccatctgtctccctcttcttac 769
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space: 536081
Effective search space used: 536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no351_c05.g1 MSMg01no351_c05.g1 CHROMAT_FILE:
MSMg01no351_c05.g1 PHD_FILE: MSMg01no351_c05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:19 2005
(514 letters)
>mm_chr7_27245024_27245937
Length = 914
Score = 777 bits (402), Expect = 0.0
Identities = 463/514 (90%), Gaps = 51/514 (9%)
Strand = Plus / Minus
Query: 1 tcacctgccatgagggaggcccaggttcaattccaggcccattgcagagtacagtccctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 tcacctgccatgagggaggcccaggttcaattccaggcccattgcagagtacagtccctg 799
Query: 61 ctgggcagtggtggcacatgcttttaatcccagcacttgggaatcagaggcaggccagcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 ctgggcagtggtggcacatgcttttaatcccagcacttgggaatcagaggcaggccagcc 739
Query: 121 tggtctacagagtgagttccaggacagccagggctacacagagaaaccctgtctcaaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 738 tggtctacagagtgagttccaggacagccagggctacacagagaaaccctgtctc---aa 682
Query: 181 aaaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaa 240
||||||| |||||| ||
Sbjct: 681 aaaaaga-------------------------------------------aaagaa--aa 667
Query: 241 agaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaaagaaaacaagactgctgc 300
| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 666 a-aaagaaagaaagaaagaaagaaagaaagaaagaa--aaaaagaaaacaagactgctgc 610
Query: 301 catttctcttctcattactgttacactgctatttattttttcatggtagaatttctatac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 catttctcttctcattactgttacactgctatttattttttcatggtagaatttctatac 550
Query: 361 acaataactaattcacaatgcatttttgggtcctctcttccatgtctttctcattctttg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 acaataactaattcacaatgcatttttgggtcctctcttccatgtctttctcattctttg 490
Query: 421 gacatgacatgtctcctataggctcctgtgtttaaaaacttaatccccagatgggggaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 gacatgacatgtctcctataggctcctgtgtttaaaaacttaatccccagatgggggaat 430
Query: 481 tgatttggtaagtagtgggacctatgaaatatta 514
||||||||||||||||||||||||||||||||||
Sbjct: 429 tgatttggtaagtagtgggacctatgaaatatta 396
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 71
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space: 455616
Effective search space used: 455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
