BAC Information

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BAC

Clone NameMSMg01-352C08
Chromosome7 (Build37)
Map Location 66,499,571 - 66,499,702
singlet/doubletsinglet
Overlap geneUbe3a
Upstream geneAtp10a, LOC621446, LOC668811, LOC668813, LOC668815, EG668818
Downstream geneLOC100040985, LOC100041010, LOC100041029, LOC100041051, Pwcr1, LOC664788, Snrpn, Snurf, EG664849
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352C08.T7 (MSMg01no352_c08.b1)MSMg01-352C08.TJ (MSMg01no352_c08.g1)
ACCAG463345AG463346
length791778
length of high quality
(start - end)
64 (350 - 413)133 (83 - 215)
definitionCHROMAT_FILE: MSMg01no352_c08.b1 PHD_FILE: MSMg01no352_c08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:35 2005CHROMAT_FILE: MSMg01no352_c08.g1 PHD_FILE: MSMg01no352_c08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTAAACTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTGTCTATTTACCGAATCAATGATGACAATCCAATGTC
ATGAAGAAAGGAGATGACATAAAATTCATGGTCAAGAGGATTACACTGAG
GCCCAATCAGGGTGACAGGGTCACAAGAGGTCCGTTGACTCCTTGGGGGG
TTCTAGGGTGACTTCCCTGAAGGCCTCAAATGCCCTTGCCCTGTTTCCCA
TGATAGGAAATGTGGACATCTAAGGTGCACATTGGTTGGTAAACACTGTG
TGCCAACAAGCACCTAGTCCCACAATGGAACCTTGGGCATTTCTCGCAGG
ATCGCCCCTTGCTCATGACAATGTCTTTTCTGGTGTTTTGCAGTCATCTC
ACATGCCACCTTGTAAGGCAGAGCAACCCAGATAATCAGGTAAGTGGTCA
GAACATGGTAAAGCCTCCACATCCAGGTGACCTCTCCCTTCTTGATTTGA
CTTTCAATTCTCAGCCAGTCGGTCCCTTTTGGTATTTTGGGATAAAAAAC
ATGGTATGCCATGGTTCCCCACGGAGTTCGCATTCATCTTTTTTCTTTCA
ACGTTCATCCCCCTGATTTGCAATGACTTCTCAGAAAGCGGTTCTTTTTC
CTCCAACCTGTTTTCTCCTCTCCTTTCCTCCCTCCTTCTTTTTGTCCCCC
CGCCCGTTCCTCCCTCTCCCCTCCTTTATTTATGCGACCCACCCTTACTC
TTTCTTTTTTTATTCCTCTTTACCCATACCACTTACTCTTT
NNNTTTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTATTTCTGATGTATTGT
CGGTAAAAAGCATCAAGCATTTTAAGAGCAGAGAACAGTTTTATAACTAT
TAGTAGGTGTTACATATACTTTGTGGTTTGTAACACCTACTAATAGTTAT
GAAAAATAGAGTTACTTTGAAAGTTAACTCTAGTTTTAGGATATATTTTG
GCAACTTAGTTAGAATATTATTAGAATTGTCTGCATAGACATTCTGATGT
ACTCTGTGATCGAAAACATGCTTTTATTGTATTTATATATTTTTCTCCTG
ACTAAAGTAAAACTGTCTGAATGGGAGCAGCCTCTGCTATACTATGTCTA
AGACATCAAGAAGAGTATTACCCCCGAATAATACCTTGTTTGGACTAACT
CTACTCTGATCTTTTTGGTGCCTCTTTCCTTTTACTCTGGCTGACCGCGG
CTTAACAACCCCCTTTTATTTTTGCGCCTTTTCTCTACTTTCCCCTTTTA
CTTTTCCTTTTTTTGTCCGCTCTTTATCCTCCTTCCTTTCCTTCTTCTTC
CTTTCTTCCTCCCTCTTTCTCTTCTTTCCTTTTTCCTTTTCTTTCCTTCC
CTTTTCCCTCCCTTCTCCTTTTTCTTTCCTCCCCCCCCCCTTTTCTCTCC
CTCCCCCCTTTCCCCTCCCTCTTTATTCCTTTTTCATCCCTCTTTCCTTT
CTTCCCCCTTTCCTTTCCCCTTCCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_c08.g1 MSMg01no352_c08.g1 CHROMAT_FILE:
MSMg01no352_c08.g1 PHD_FILE: MSMg01no352_c08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:35 2005
         (133 letters)



>mm_chr7_66499371_66499902
          Length = 532

 Score =  219 bits (113), Expect = 7e-62
 Identities = 128/133 (96%), Gaps = 1/133 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttatttctgatgtattgtcggtaaaaagcatcaagcattttaagagcagagaacagtttt 60
           |||||||  |||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 ttatttcaaatgtattgtcagtaaaaagcagcaagcattttaagagcagagaacagtttt 260

                                                                       
Query: 61  ataactattagtaggtgttacatatactttgtggtttgtaacacctactaatagttatga 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 ataactattagtaggtgttacatatactttgtggtttgtaacacctactaatagttat-a 319

                        
Query: 121 aaaatagagttac 133
           |||||||||||||
Sbjct: 320 aaaatagagttac 332


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 133
Length of database: 532
Length adjustment: 8
Effective length of query: 125
Effective length of database: 524
Effective search space:    65500
Effective search space used:    65500
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)