BAC Information

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BAC

Clone NameMSMg01-352C18
Chromosome7 (Build37)
Map Location 126,588,864 - 126,589,331
singlet/doubletsinglet
Overlap geneGp2
Upstream geneLOC100042845, E030018N11Rik, Coq7, Tmc7, B230311B06Rik, Tmc5, Mir16, 6330503K22Rik, 9030624J02Rik, 2310008H09Rik, Iqck, Gprc5b, Gpr139, LOC100042871
Downstream geneUmod, 1700007B13Rik, C730027J19Rik, Acsm2, Acsm1, BC048390, Thumpd1, EG434233, Acsm3, Exod1, 2610020H08Rik, Dcun1d3, LOC100043399, LOC100043396, Lyrm1, Dnahc3, Tmem159, Zp2, Anks4b, Crym, Abca14, Abca15, Abca16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352C18.T7 (MSMg01no352_c18.b1)MSMg01-352C18.TJ (MSMg01no352_c18.g1)
ACCAG463365AG463366
length765815
length of high quality
(start - end)
474 (44 - 517)366 (76 - 441)
definitionCHROMAT_FILE: MSMg01no352_c18.b1 PHD_FILE: MSMg01no352_c18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:37 2005CHROMAT_FILE: MSMg01no352_c18.g1 PHD_FILE: MSMg01no352_c18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCG
GAATTCCTTGTTTCTCTCTGAAAAATCAACATAGTAAGTTCCTTAACATC
ACTGAGCCTCAGTCTTGCCATTGGCAAGTGAGAGATGGAGGTGCTTTCTT
CACAAATCCATTAGGAAAAGTAGACAGAATGTGCTTCACTGTGTGCCTGC
CAGACGACAGAAGCCTTCACAGTGAGGATTGCTTGTGGGGGTGGTGACTG
GAACCCAGGAGTATTGGGAGCGGCTATGGCCCCATGACAGCAGCCATCAG
AGCATGACCAAGGAGACCTTCTCCTGCTGCTCTTGCCCACAGGTGCTCAG
AGTTCTGCTACCTCGAAGGGGACTCCCCACACTACAGGTATACGGTTTCC
TTATGCTTTTCTTACAGCCCTGCCAAGTTTCTCTCCTGTCCTCCCACCCT
CTGGACATCTATGTATCCCCTTCAATGTGTCAGGCCCTGCTGGGGACCAG
GGCTTGGTGAAATGAGGCTAACCCAAGAGTGGTTCTATAATCTAGAAGTA
GAGCCAGCTGCTTAACAGCCAGTGTTTAACAAGTGAGACTGTGTGCCAGG
CCCTTGCTCCAGGAATTGATAATATGAAGCTGAACTTGAACCTGAAGGTG
CCTTCCTCTCTAAAGATTGGGTTCCCCGCTTTATTATTCCTCCCTTTTCC
CCCCCCCGCTCTTTTTTGTCTCCCTCCCACCCAACAATTTGCCGCGTTCA
CCTACGCCACCCCTG
NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCCCATTTT
TAATGGGGTTATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATAT
ATATTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTC
CCAATCTGTTGGTGGCCTTTTTGTCTTTTTGAGAGTGTATTTTTGCCTTA
CAGAAGCTTTGCAATTTTATGAGGTCCCATTTGTCGATTCTCGTTCTTAC
AGCACAAGCCATTGCTGTTCTATTCAGGAATTTTTCCCCTGTGCCCATAT
CATCGAGGCTTTTCCCCCACTTTCTCCTCTATAAGTTTTGGTGTCTCTGG
CTTCATGTCAAGTTCCTTGATTCAGTGGCATTTTCTTGTGCCCTATTGTA
GAAGTTCTACTTTTACATTTTCCATTGCCCCCCCTGTTGCCCTTGTAACT
TATGTCGTCGTCGATTTCTTCCTCACTCTTATATTTTATTCTCCCCTTTT
CTTCTCTTTTCCCTCTTTTGCTTTTCCTTTTTTTTTGCCCCTCTTATTCT
CTCCTTCCCTTCCTTTTTTCCTCTTTCTTTTTCTTCCTTTTTTTCCATAT
ATCCTTTTCTCCCTTTCTTTCTCTTCCCCTTTTCCCCTTCCTTTCTCCCT
TTTTCTTTCTCTCCCCCTTCCCGTTTCTCCCTCTCCCCCCCTTTTCCCCT
CCCTCGTATTACTTCTTTTCTCCTCCCTCTTCTTTTCTTCCCCTCTTCTT
TTTCACCTTCCTACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_c18.b1 MSMg01no352_c18.b1 CHROMAT_FILE:
MSMg01no352_c18.b1 PHD_FILE: MSMg01no352_c18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:37 2005
         (474 letters)



>mm_chr7_126588658_126589531
          Length = 874

 Score =  882 bits (456), Expect = 0.0
 Identities = 465/468 (99%)
 Strand = Plus / Minus

                                                                       
Query: 7   ggaattccttgtttctctctgaaaaatcaacatagtaagttccttaacatcactgagcct 66
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 ggaattccttgttactgtctgaaaaatcaacatagtaagttccttaacatcactgagcct 615

                                                                       
Query: 67  cagtcttgccattggcaagtgagagatggaggtgctttcttcacaaatccattaggaaaa 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 cagtcttgccattggcaagtgagagatggaggtgctttcttcacaaatccattaggaaaa 555

                                                                       
Query: 127 gtagacagaatgtgcttcactgtgtgcctgccagacgacagaagccttcacagtgaggat 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gtagacagaatgtgcttcactgtgtgcctgccagacgacagaagccttcacagtgaggat 495

                                                                       
Query: 187 tgcttgtgggggtggtgactggaacccaggagtattgggagcggctatggccccatgaca 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tgcttgtgggggtggtgactggaacccaggagtattgggagcggctatggccccatgaca 435

                                                                       
Query: 247 gcagccatcagagcatgaccaaggagaccttctcctgctgctcttgcccacaggtgctca 306
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 434 gcagccatcagagcatgaccaaggagaccttcacctgctgctcttgcccacaggtgctca 375

                                                                       
Query: 307 gagttctgctacctcgaaggggactccccacactacaggtatacggtttccttatgcttt 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gagttctgctacctcgaaggggactccccacactacaggtatacggtttccttatgcttt 315

                                                                       
Query: 367 tcttacagccctgccaagtttctctcctgtcctcccaccctctggacatctatgtatccc 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tcttacagccctgccaagtttctctcctgtcctcccaccctctggacatctatgtatccc 255

                                                           
Query: 427 cttcaatgtgtcaggccctgctggggaccagggcttggtgaaatgagg 474
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 cttcaatgtgtcaggccctgctggggaccagggcttggtgaaatgagg 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)