BAC Information

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BAC

Clone NameMSMg01-352I04
Chromosome7 (Build37)
Map Location 68,906,486 - 68,906,821
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041229, LOC625287, D0Kist2, LOC100041248, LOC100041259, EG664943, B230209E15Rik, EG620934
Downstream geneLOC100041293, Ndn, Magel2, Mkrn3, Peg12, Atp5l-ps1, EG665038, LOC669222, LOC384631
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352I04.T7 (MSMg01no352_i04.b1)MSMg01-352I04.TJ (MSMg01no352_i04.g1)
ACCAG463620AG463621
length761755
length of high quality
(start - end)
422 (58 - 479)269 (83 - 351)
definitionCHROMAT_FILE: MSMg01no352_i04.b1 PHD_FILE: MSMg01no352_i04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:05 2005CHROMAT_FILE: MSMg01no352_i04.g1 PHD_FILE: MSMg01no352_i04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGGGGTGCAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCAGAGATTGTATTGTTACCAACATTCTCTAGTCT
CTAACAATTTCATGTAAATACCAGTATACCTGTTTGTTAATATGTGTATC
CTATAAATAAATTTCAGGTGCTCATATTGTCAAGCCATCATGTAGGTGAC
TGAGCCAACACTAAGTTGTGCAATTAAAATTATATAAGCAAATATCAACA
TAAGAAATATAACTTAAGGACCACAGTGATATTCATTATGTATAGCCATC
TATTCTACTTCCTTCCCAGCTCTGATTTTATCCTATGTGCTCCTCCAGTT
TCAACATTGTTTTCTAAATACTGGATTGATCTATTAGAAAATAAGCATTC
TATCTTTATTTAGTGCATTTGGTGTTCTGATTATTATGTGTCGGGAGGAA
TTTCTTTTCTGGTCCAGTCTATTTGGAGTTCTGTACGCTTCTTGTATGTT
CATGGGCATCTCTTCCTTTAAATTTGGGAAAGTTTTCCTCCACATTTCTC
GCTCAATACCCTTGCTTGTTTTTCTTTATCTTACATCCCTCTTTTTTCCT
TCACTCTCCATTATCCCGCCATTCTCTCCCTCCCTTCTCTCGCTCTCCCG
CCCCTCTCCCCTCATTTTTTCCCCCCCCTTTTTCTCCCCCCCTCTTTTTT
TTTTTCTCCTCACCCCACCTCTCCCTATCTTTATCCCATTCCCCCTCCCC
CCTCCCTCTTN
NNNTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCCCAATACAATGCA
AGTACTTCAGCAGTAAGTAAGTTCACAATTTTCTCATTTTGTGGAGTCAT
CACATCTTTGGAGGTTGTCAGTAGCTGGCAAGACTGGATACTGTAAATAG
TAGCAGCCATGGTCTGCTCTACCTTGTCCTGGAAGTCACTGGCCACACAC
TGTGGTTGGATCGGGGCAGCTTCAGAAATGTGTGGCATGAACCTACTTCT
GGGTTTGTTAATCCTGTTGAAGAATGATAATGTGGATAAAAACCAGTTTG
TAGTCAGGGACAAGCAGGCAAGGAAAGCTGTATGTCAGCTGACAGGGGCA
TGTATTCTTATGATCGCGGTAAAGCCCTGCCATGATTGCACTTTTTTCTT
ACGCTTCTTTCCCATGCCCTTTTGCCGTGCAGGCTACGACTGACCTCTGA
ATTTCTTTTAAACACCGTTTCATCTCTATTCCCCTTTTGCCTTCCCTTTT
TTTCCCCTCTCTTGCCTCCTCCCTTCCTTCTTCGTCCTTTCACCTTCCCC
TTTTCCTTTTTCCTTGTATCCTTCTCTCCCCCCCTTTTCCCGCCCCCTCC
CCTTTCTTTCCTCCCCCCCCCCTTTCATCCCTCCCCCCTTTACCCGTCCT
CGTATTCTTCATTTTCCTCTTTTACTTTATTCCCCCTTCCCTTCCCCCTC
CTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_i04.b1 MSMg01no352_i04.b1 CHROMAT_FILE:
MSMg01no352_i04.b1 PHD_FILE: MSMg01no352_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:05 2005
         (422 letters)



>mm_chr7_68906282_68907103
          Length = 822

 Score =  619 bits (320), Expect = 0.0
 Identities = 332/336 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagagattgtattgttaccaacattctctagtctctaacaatttcatgtaaatac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagagattgtattgttaccaacattctctagtctctaacaatttcatgtaaatac 264

                                                                       
Query: 65  cagtatacctgtttgttaatatgtgtatcctataaataaatttcaggtgctcatattgtc 124
           ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 265 cagtatacctgtttgttaaaatgtgtatcctataaataaatttcaggtgatcatattgtc 324

                                                                       
Query: 125 aagccatcatgtaggtgactgagccaacactaagttgtgcaattaaaattatataagcaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aagccatcatgtaggtgactgagccaacactaagttgtgcaattaaaattatataagcaa 384

                                                                       
Query: 185 atatcaacataagaaatataacttaaggaccacagtgatattcattatgtatagccatct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atatcaacataagaaatataacttaaggaccacagtgatattcattatgtatagccatct 444

                                                                       
Query: 245 attctacttccttcccagctctgattttatcctatgtgctcctccagtttcaacattgtt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 445 attctacttccttcccagctctgattttatcctatgtgctcctccagtttcaacattttt 504

                                               
Query: 305 ttctaaatactggattgatctattagaaaataagca 340
           ||||||||||||||||| ||||||||||||||||||
Sbjct: 505 ttctaaatactggattggtctattagaaaataagca 540


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space:   335769
Effective search space used:   335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)