BAC Information

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BAC

Clone NameMSMg01-352M18
Chromosome7 (Build37)
Map Location 109,565,892 - 109,566,336
singlet/doubletsinglet
Overlap geneStim1
Upstream genePde2a, Art2a, EG630138, Art2b, Clpb, Phox2a, Inppl1, Folr2, Folr1, 3200002M19Rik, F930017I19Rik, 2400001E08Rik, Lrrc51, LOC667222, Numa1, Il18bp, Rnf121, Trpc2, Art5, Art1, Chrna10, Nup98, Frag1, Rhog
Downstream geneRrm1, Olfr543, Olfr544, Olfr545, LOC667284, Olfr547, Olfr548-ps1, Olfr549, Trim21, LOC384699, Olfr550, Olfr551, Olfr552, Olfr553, Olfr554, LOC100040840, Olfr555, Olfr556, Trim68, Olfr557, Olfr558, Olfr33, Olfr559, Olfr78, Olfr560, Olfr561, Olfr562-ps1, Olfr563-ps1, Olfr564, Olfr565-ps1, Olfr566, GA_x5J8B7W5P47-379997-380552, Olfr567-ps1, Olfr568, Olfr569, Olfr570, Olfr571, Olfr572, Olfr573-ps1, Olfr574, Olfr575, Olfr576, Olfr577, Olfr578, Olfr1527-ps1, Olfr579-ps1, Olfr580-ps1, Olfr581-ps1, Olfr582, Olfr583, Olfr584, Olfr585, Olfr586, Olfr587-ps1, Olfr588-ps1, Olfr589, Olfr590-ps1, Olfr591, Olfr592, Olfr593, Olfr594, Olfr595-ps1, Usp17, Dub2a, LOC100041187, Olfr597, GA_x5J8B7TU1BB-380-666, Olfr598, Olfr599, Olfr600, Olfr601, Olfr602-ps1, Olfr604, Olfr596-ps1, Dub2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352M18.T7 (MSMg01no352_m18.b1)MSMg01-352M18.TJ (MSMg01no352_m18.g1)
ACCAG463834AG463835
length778879
length of high quality
(start - end)		444 (46 - 489)61 (74 - 134)
definitionCHROMAT_FILE: MSMg01no352_m18.b1 PHD_FILE: MSMg01no352_m18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:28 2005CHROMAT_FILE: MSMg01no352_m18.g1 PHD_FILE: MSMg01no352_m18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGTCACCCTTGGCTAAAAATCAACAGAGAAAATGGATGACTAAAA
GGCACATCAGACTTGTCTGTGGCCACGGCGCTGGTAAGAATAAACAGTGG
GCTACCAGCAGTGCTGCAACACAATTTTCTACCTACTGTGCCCTTGGAGA
AGGAGTTGCTTTTCCTTAGAATGGACGCCAGATGGCGTCCATGCACAGCT
AACAAAAACATCAGAGGTGCCATTTCCCCCATCTCCAGTCTTGCTGATGT
CTACTGTCCCATGACCCAACTGCAAGAAGCTGTACCACCAGAGAGTCAAT
TCTTCACTGAAATGCTGTTGCTTTCAATACAGCCTCTCCTGAAAAAGCCA
GTATTACCACACCCTTCTATTACAGAAAAGTGGACCTACTATGTAGTAAA
GACAGAGATCAATATATAATATTATGTGGAGAAATGAGTAAATAAATGTA
CAATTAAGCACTGTCCTGCTCAAAGCAACCAATCCATAAGGAAGATAATT
AAGCAGCCCGACTGAAATCTCCTGACTGTGGCTCCCACATTTGCGGGACT
AGGTATACTTCCCCCGCTTCTCCCTCTTCCGAAGTAAACTCATTCCTGTC
TTTTTCTAATATATATTTTTATATCCTTGTACTCCTTCTTGTATTTTTAT
TCACCGCCCTATTAACCCCCCCCCACTTTTTTTCCCCCCCCCCCCCCTCC
GTTTTTCCCCTTACATCCCCCATCACAG

NCCATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCGAGAGGAGGGGCTGTTGGTTGTTGG
TCATTCAGGGGGTTGGTTATGATTTGTTAAGAGTTGCGTTTGCCCTCCTT
CCCTCTCCTCTCTCCTTGGCGCGCCCTTCCCCCTTCTCTCTCCTCCCCCC
CCTCTCCTTTCCCCTCCCCTATCCCCCTCCTCCCTCCCCCTGCGCTCCTC
TTTCCCCTCCCCCTCTTCCCCCCCTCCCCTTCCCTCCCCCCCCCCCTCCC
CCCCTCCTTTCCCCCCCTTTTCTCCCCTCGCCCCCCCCCTTTCTCCCCCT
CCCCCCCCCCCCCTTCTCTTTTTTCCCTTTCCCGCTCCTCTCTCCTCCCT
CTTCCCCCCCCTTTCTCCCCCCCCTTCTTCTCCTTTTTCCCCCCCTTCTT
TTTCCCCCTCTCCCTCCTCCTTTCCCCCTTTTCCCCCTCCCCCCTCCCTC
CCCCCCTTTTCCCCTTTTCCCCCCTTTCCTCTCCTCCTCCCTCTCCTCCC
CCCTCCCCCCCTTCCCTTTTCTCCCTCCCCCCTCTCCTCCTCCTTTTCCC
CCCTTTTCCCCTTTCCTCCCCTCTTTTTCCCTCCTCCCCTTCCCCCCCCT
CCCCTCTCCTTCCTTTCCTCCCTTCCCCTCCCCTCCCCTCTCTCCCCTTT
CCTTCCCCTTCCCCCCTCTTCCCTCTCTCCCCCCTTTTGCCCCTCCCCCC
CCCCCCTTTCCTTTCCCCCCCCCCCTCCCCTCTTCTCCCCCTCTCCCCGC
CTCTTCTCCTCCCCTCCTTCTTCCTCCCTCCCTCCTCTCTCCCCCTTCTC
TTCCTCCCCTCCCTTCCCCCCTTCCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_m18.b1 MSMg01no352_m18.b1 CHROMAT_FILE:
MSMg01no352_m18.b1 PHD_FILE: MSMg01no352_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:28 2005
         (444 letters)



>mm_chr7_109565688_109566536
          Length = 849

 Score =  818 bits (423), Expect = 0.0
 Identities = 438/445 (98%), Gaps = 5/445 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtcacccttggctaaaaatcaacagagaaaatggatgactaaaaggcacatca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 gaattcagtcacccttggctaaaaatcaacagagaaaatggatgactaaaaggcacatca 590

                                                                       
Query: 65  gacttgtctgtggccacggcgctggtaagaataaacagtgggctaccagcagtgctgcaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 gacttgtctgtggccacggcgctggtaagaataaacagtgggctaccagcagtgctgcaa 530

                                                                       
Query: 125 c----acaattttctacctactgtgcccttggagaaggagttgcttttccttagaatgga 180
           |    |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 cacaaacaattttctacctactgtgcccttggagaaggagttgcttttccttagaatgga 470

                                                                       
Query: 181 cgccagatggcg-tccatgcacagctaacaaaaacatcagaggtgccatttcccccatct 239
           |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 cgccagatggcgatacatgcacagctaacaaaaacatcagaggtgccatttcccccatct 410

                                                                       
Query: 240 ccagtcttgctgatgtctactgtcccatgacccaactgcaagaagctgtaccaccagaga 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 ccagtcttgctgatgtctactgtcccatgacccaactgcaagaagctgtaccaccagaga 350

                                                                       
Query: 300 gtcaattcttcactgaaatgctgttgctttcaatacagcctctcctgaaaaagccagtat 359
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 349 gtcaattcttcactgaaatgctgttgctttcaatacagtctctcctgaaaaagccagtat 290

                                                                       
Query: 360 taccacacccttctattacagaaaagtggacctactatgtagtaaagacagagatcaata 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 taccacacccttctattacagaaaagtggacctactatgtagtaaagacagagatcaata 230

                                    
Query: 420 tataatattatgtggagaaatgagt 444
           |||||||||||||||||||||||||
Sbjct: 229 tataatattatgtggagaaatgagt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 849
Length adjustment: 10
Effective length of query: 434
Effective length of database: 839
Effective search space:   364126
Effective search space used:   364126
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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