BAC Information

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BAC

Clone NameMSMg01-352O12
Chromosome7 (Build37)
Map Location 53,953,631 - 53,953,947
singlet/doubletsinglet
Overlap geneSaal1
Upstream geneCar11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1, EG545963, Lmtk3, Pscd2, Kcnj14, Grwd1, Grin2d, Kdelr1, Syngr4, Tmem143, Emp3, BC013491, LOC677321, Abcc6, Nomo1, Kcnj11, Abcc8, Ush1c, Otog, Myod1, Kcnc1, Sergef, Tph1
Downstream geneSaa3, Saa4, LOC100040106, Saa1, Saa2, Hps5, Gtf2h1, EG668838, EG384622, Ldha, Ldhc, Tsg101, Uevld, C86187, LOC384623, ENSMUSG00000056509, Spty2d1, LOC100040174, Tmem86a, Ptpn5, LOC100041710, Mrgpra6, EG668725, Gm660, Mrgpra1, LOC668846, LOC100040217, LOC668727, Mrgpra2, LOC638950, Mrgprc4-ps, LOC677457, EG668729, Mrgpra3, Mrgprc1-ps, LOC100040314
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352O12.T7 (MSMg01no352_o12.b1)MSMg01-352O12.TJ (MSMg01no352_o12.g1)
ACCAG463917AG463918
length785771
length of high quality
(start - end)
225 (73 - 297)338 (81 - 418)
definitionCHROMAT_FILE: MSMg01no352_o12.b1 PHD_FILE: MSMg01no352_o12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:37 2005CHROMAT_FILE: MSMg01no352_o12.g1 PHD_FILE: MSMg01no352_o12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAACTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCATACTCCTACACACAAGTGAAAAAAGGGAAAAACGAAA
ATGCTGGGTATATTTTAAGCTTTCTTAACACAAAAATGACAAGTATGCGA
CCTAACCATTAGCTTGACCTAACCATTCCATGATGTGTACTTATTCAAAA
CTTCATGTTGGACAACACACACACACACACATACACGTGTATATGTATGT
GTATATATGTATATAAAATAGAAATATTTGTTAATTAAAAAAAAAAAGAC
TGGAGAGGCTAGAGGAGTAGCTCATTGGTTAAGAGCGTCGGCTGCTTTCC
CAGAAGACCTGGGTTCAGTTCCCAGCAACCTTATGCTGGCTCCCACACTG
AATGAGGTTTTAGCTTTATTCAACCATCGCCCTTTCCTTCTGCCTTTCAT
ACGCACTGGACACTCATACTTACTCCTATGTCACTTCTCCAACCCCACAA
CATCCCTTCACCTCTACCTACCGCATTTTTATACATAACGCAATTTATAT
ACACTATTTTCCCACCGCTTATATCCTTATCCTTGATTTTCCATCCCCTC
TGAACCCCCCTTCTCCCCTTTACCTCACTCCTCGTCCCTTACCCATAGCC
ATCTCCCTTCCTTCCCTCTTCCATTCTCCCCTTCATCTTTTTTATCTCCC
CGTTTTTCCCCTCCCCCTTCCTTTTTCTTCCACACCTCCCCCCTCCCCTT
TATTCTTCCTCCTTCCCCCTTACCCCTTTCCCTTG
NCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTCTGCCTCCACATCTATC
TGTCATCTCTGAGCCATCTCTCCAGCCTTTGTCTTACTGTTTTTAAACTT
TATCTGATATTAAGTTACATGTACTTTGCCATTTTTCTATCTCTGACTTT
TTTTAAAGATTTATTTATTTTATTTATATGAGTACACTGCAGTCTTCAGA
CACACTTGAACTTCAGATCCCATTACAGAGATGAATGTGAGCCACCACGT
GGTTGCTGGGAATTGAACTGAGACCCTCTGGAGGAGCAGTCAGTGCTCTT
AACTGCTGAGCCATGTCTCCAGCCCTCTGACTTGTTTTCTCTTTATCTAC
GTGGGTTGCCTAGGCTCCCTGCCGGTTTAAACATCTGACAGGAGGCTCTC
TTCTCTTGACTCTCTAATGTCTCAAGAGTCTCACCATTTAGCGTTATTGG
GCATAACGTGCTTGTTTTTTTCCCTGTAACGCTGTTTTTCACTTTTCTTT
CCTTTATTTTTCCCCTCTCTTCCTCCTTCCTTCCTTCCTTCTCCCTCCTT
TCTCTCTCCTTTCCCATTTTCCCTTTTCCTTTTTTTCCCCTCCCCTTATC
CCTCCCTCTCCTCTTTCTTTCCTCCCCCCCCCTTTTCTCCCATTCCCCAC
TTTCTCCCCTCCACTCTTCTTCTCCTACTCCCTCCTCTCCTTTCCTTCCC
CCTTCCCTATCCCCTCCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_o12.g1 MSMg01no352_o12.g1 CHROMAT_FILE:
MSMg01no352_o12.g1 PHD_FILE: MSMg01no352_o12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:37 2005
         (338 letters)



>mm_chr7_53953631_53954368
          Length = 738

 Score =  590 bits (305), Expect = e-173
 Identities = 315/319 (98%), Gaps = 2/319 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtctgcctccacatctatctgtcatctctgagccatctctccagcctttgtcttactgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tgtctgcctccacatctatctgtcatctctgagccatctctccagcctttgtcttactgt 258

                                                                       
Query: 61  ttttaaactttatctgatattaagttacatgtactttgccatttttctatctctgacttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ttttaaactttatctgatattaagttacatgtactttgccatttttctatctctgacttt 198

                                                                       
Query: 121 ttttaaagatttatttattttatttatatgagtacactgcagtcttcagacacacttgaa 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 tttttaagatttatttattttatttatatgagtacactgcagtcttcagacacacttgaa 138

                                                                       
Query: 181 cttcagatcccattacagagatgaatgtgagccaccacgtggttgctgggaattgaactg 240
           ||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 137 cttcagatcccattac--agacgaatgtgagccaccacgtggttgctgggaattgaactg 80

                                                                       
Query: 241 agaccctctggaggagcagtcagtgctcttaactgctgagccatgtctccagccctctga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79  agaccctctggaggagcagtcagtgctcttaactgctgagccatgtctccagccctctga 20

                              
Query: 301 cttgttttctctttatcta 319
           |||||||||||||||||||
Sbjct: 19  cttgttttctctttatcta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space:   239841
Effective search space used:   239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)