BAC Information

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BAC

Clone NameMSMg01-354D24
Chromosome7 (Build37)
Map Location 11,334,250 - 11,334,639
singlet/doubletsinglet
Overlap geneV1re13
Upstream geneLOC100042894, Vmn2r47, 2810047C21Rik, LOC665625, LOC545911, EG625580, LOC100042163, LOC625605, EG434117, EG628152, LOC100042921, Vmn2r52, LOC665663, V1re11, LOC628521, LOC628525, LOC100042206, Nlrp4d, LOC100042214, V1re10, Zik1, EG628580, V1re9, V1rl1, EG628596, Nlrp4b, LOC333184
Downstream geneBQ559217, LOC637237, LOC236479, EG665879, Zscan4b, LOC665793, EG665798, Gm397, Zscan4-ps1, LOC635187, LOC100042997, LOC100042293, Zscan4d, LOC628737, LOC676750, LOC672893, LOC546931, LOC675762, Zscan4e, LOC665857, LOC665861, Zscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782, LOC100042386, LOC665926, LOC637571, LOC100043042, LOC628853, V1rg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-354D24.T7 (MSMg01no354_d24.b1)MSMg01-354D24.TJ (MSMg01no354_d24.g1)
ACCAG464926AG464927
length780771
length of high quality
(start - end)
463 (48 - 510)407 (78 - 484)
definitionCHROMAT_FILE: MSMg01no354_d24.b1 PHD_FILE: MSMg01no354_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:21 2005CHROMAT_FILE: MSMg01no354_d24.g1 PHD_FILE: MSMg01no354_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTGTTCGAT
TTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCC
CCTATCTGATTTAGGACAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTC
TTTTTGTCTTAATGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTC
ATTAGGTCCCATTTGTCAATTCTTACAGCACAAGCCATTGCTGTTTTGTT
CAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCT
CCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCTTTGATCCAT
TTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATTCT
TCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGT
CTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCA
TANGTGTGTGGGTTCATTTCTGGGTTTCAATTCTATTCCATTGGGCTACT
TGTCTGTCTCTATACCTGTACCATGCAGTTTTTACCACAATTGCTCTGTA
TTAAAGCTTTATGGCCCGCCTGGTGGATCCCCCCCAAGGTCTTTTTTTCT
TGGAAAAAGATTTTTGGTTCCCAAGGTTTTTTGTTTTTCCCAAGAAAATT
AAAAATGGCCCTCCCTATTTTTTTAAAATA
NNCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTATACTTGCAAGTACAAGACC
AACATAGACCANNAAAAAAAAAAAAAAAAAAAACAACAACAAAACCCTCA
TGCCAAAATCATTGAAAGGAGTGATTACTTTCCATGCTTGTTACTGTAGG
ATTACTCAGTACCTGAGAATGTATGTACCAATAAAAGGAGATATGTCAAG
TTTTCTAGAATGTGCCGCACTCAGGATAATGCAATACTGGCCTATGAGAA
AGGAGGAAAAGTGATAGTCAATATTAAAAAAAATAAGACTTTTCAGGATA
TATATAGAAATCAACTTCAGTAAAAGCACAAAACTTAAATAAAGCAATTC
TCCATTTTTTGCAACAAAATATTTTCATTCATTTGGGAGTTTCATATACT
TTTCCCTGATCAAATCCATTTTTACACTTCCAACATCCACCACATTCCAT
TTTGACCTCACCTGAAAGAAAAGAAAAAAAATGCTGTTCAAATTTTGTTG
CCTATATACTCTCTGAAGCAGGTCAGTTTTACTTAATAAACAAAAATGTT
TATTCCGATGATAATTCACCTGAAACCAGGGATAGTAAGGAAAAAAGTTA
AATCCCTCCAAAAAGTCTTAAACTTCAGAAGAACAAAGTTCCCCGGCCTT
TTCCGCTGGGCCCGGGGGTTTACCCAAAATAACCCCCCCTCTTTATCCCC
TTAAAAAATCCCAAAAAAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no354_d24.g1 MSMg01no354_d24.g1 CHROMAT_FILE:
MSMg01no354_d24.g1 PHD_FILE: MSMg01no354_d24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:21 2005
         (407 letters)



>mm_chr7_11334037_11334842
          Length = 806

 Score =  596 bits (308), Expect = e-174
 Identities = 374/407 (91%), Gaps = 20/407 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttatacttgcaagtacaagaccaacatagaccannaaaaaaaaaaaaaaa--aaaaaca 58
           |||||||||||||||||||| |||||||||||||                |  |||||||
Sbjct: 214 tttatacttgcaagtacaaggccaacatagaccac---------------attaaaaaca 258

                                                                       
Query: 59  acaacaaaaccctcatgccaaaatcattgaaaggagtgattactttccatgcttgttact 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 acaacaaaaccctcatgccaaaatcattgaaaggagtgattactttccatgcttgttact 318

                                                                       
Query: 119 gtaggattactcagtacctgagaatgtatgtaccaataaaaggagatatgtcaagttttc 178
           ||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 319 gtaggattactcaatacctgagaatgtatgtatcaataaaaggaaatatgtcaagttttc 378

                                                                       
Query: 179 tagaatgtgccgcactcaggataatgcaatactggcctatgagaaaggaggaaaagtgat 238
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 379 tagaatgtgccgcactcaggataatgcaatagtggcctatgagaaaggaggaaaagtgat 438

                                                                       
Query: 239 agtcaatattaaaaaaaataagacttttcaggatatatatagaaatcaacttcagtaaaa 298
           |||||||||||||||| |  ||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 439 agtcaatattaaaaaaca--agaattttcagaatatatatagaaatcaacttcagtaaaa 496

                                                                       
Query: 299 gc-acaaaacttaaataaagcaattctccattttttgcaacaaaatattttcattcattt 357
            | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 accacaaaacttaaataaagcaattctccattttttgcaacaaaatattttcattcattt 556

                                                          
Query: 358 gggagtttcatatacttttccctgatcaaatccatttttacacttcc 404
           ||| |||||||||||||| |||||||||||| |||||||||||||||
Sbjct: 557 gggtgtttcatatactttaccctgatcaaattcatttttacacttcc 603


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 806
Length adjustment: 9
Effective length of query: 398
Effective length of database: 797
Effective search space:   317206
Effective search space used:   317206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)