Query= MSMg01no354_f04.b1 MSMg01no354_f04.b1 CHROMAT_FILE:
MSMg01no354_f04.b1 PHD_FILE: MSMg01no354_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:26 2005
(623 letters)
>mm_chr7_100933625_100934647
Length = 1023
Score = 959 bits (496), Expect = 0.0
Identities = 587/618 (94%), Gaps = 6/618 (0%)
Strand = Plus / Minus
Query: 5 gaattcattgccaagttatttgaaatagctcctgagaaccattgagcctccattggtgca 64
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
Sbjct: 819 gaattcattgccaagttatttgaaatagctcctgagaaccattaagcctccatcggtg-a 761
Query: 65 -a-ttttctgaaggcttgagttcattacatgagctaccaatgatcttcccgtagttgatt 122
| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 760 gatttttctgaaggcttgagtttattacatgagctaccaatgatcttcccgttgttgatt 701
Query: 123 ttcttagattggtttg-atttttttcattgtgtatagcagccactcaaaccaaaactgtc 181
|||||||||||||||| | ||||| |||||| |||||||||||||||||||||||||||
Sbjct: 700 ttcttagattggtttgca--tttttaattgtggatagcagccactcaaaccaaaactgtc 643
Query: 182 ccctactctgtcccagtgtgtggacatgctactaagtaatcctcacggccctttctggta 241
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 ccctactctgccccagtgtgtggacatgctactaagtaatcctcacggccctttctggta 583
Query: 242 ttcttttggcacatggcaggacatttttctgcttttcttagttctccttatgtactaaat 301
|||| || ||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 582 ttctcttagcacaccgcaggacatttttctgcttttcttagttccccttatgtactaaat 523
Query: 302 acctgcaactatagcaatgacatttgaagtctttctgaggaggaaaactactaagcatta 361
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 522 acctgcaactatagcaatgacatttgaagtctttctgaggaggaaaaatactaagcatta 463
Query: 362 taacacaaattcccattacaagagatggagtagccaaatagaaagttttctactctccca 421
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tgacacaaattcccattacaagagatggagtagccaaatagaaagttttctactctccca 403
Query: 422 ggtgtctacaaatcagatatattgacactgtggtgcagctgtagcagtgcagcaatagca 481
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 402 ggtgtctgcaaatcagatatattgacactggggtgcagctgtagcagtgcagcaatagca 343
Query: 482 ggaataatggtggtaccaaacaatgcttaacactagagatcttggcaaaaacacgtatgg 541
|||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 342 ggaataattgtggtatcaaacaatgcttaacactggagatcttggcaaaaacacgtatgg 283
Query: 542 tgtttgtggctgatagaatgtctctgtcctcacacacaagcctgagtaatgaatataagc 601
||||||||||||||||||||||| |||||| ||||||||||||| | ||||||||||||
Sbjct: 282 tgtttgtggctgatagaatgtctttgtccttgcacacaagcctgaatgatgaatataagc 223
Query: 602 actttgactttctttctg 619
||||||||||| ||||||
Sbjct: 222 actttgactttttttctg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no354_f04.g1 MSMg01no354_f04.g1 CHROMAT_FILE:
MSMg01no354_f04.g1 PHD_FILE: MSMg01no354_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:26 2005
(543 letters)
>mm_chr7_100711778_100712720
Length = 943
Score = 1019 bits (527), Expect = 0.0
Identities = 539/543 (99%)
Strand = Plus / Plus
Query: 1 aagagaaaacctttgggccctgactaagagctctggtttggtgtctttccaaactatctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagagaaaacctttgggccctgactaagagctctggtttggtgtctttccaaactatctc 260
Query: 61 atttcattttgacttaaatgctttccgaaatagtcaattttgtgtaaatttctttatctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttcattttgacttaaatgctttccgaaatagtcaattttgtgtaaatttctttatctg 320
Query: 121 tagacttacttctgcatgtttattttttcaaaaagaaaaaaactcattacagtgaactga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagacttacttctgcatgtttattttttcaaaaagaaaaaaactcattacagtgaactga 380
Query: 181 aaaaataattactcagatttggtatttatgttatctaaatataacatataatctaatata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaaataattactcagatttggtatttatgttatctaaatataacatataatctaatata 440
Query: 241 catgtgtatgggtatacatttagtaataaatgttcatacaattctatcaataatacatca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catgtgtatgggtatacatttagtaataaatgttcatacaattctatcaataatacatca 500
Query: 301 tgtgcaaattagtgtctgaattaatgttgtgtagctgctgctggaaaaagaaacctattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtgcaaattagtgtctgaattaatgttgtgtagctgctgctggaaaaagaaacctattt 560
Query: 361 tattgcacaataaaatgcttttaattgttggagtcgaacagctttattacatacacatta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tattgcacaataaaatgcttttaattgttggagtcgaacagctttattacatacacatta 620
Query: 421 ctttgagaaacagtaaacttttcattgatcaaaaatgtcaccagtcatataagactgaaa 480
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 621 ctttgggaaacagtaaacttttcattgatcaaaaatgttaccagtcatataagactgaaa 680
Query: 481 ataaagaatagcacccttgaaagggagaaagaaagcataataaagtaacagtatattttt 540
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 681 ataaagaatagcacccttgaaagggagaaagaaagcaaaataaagtaatagtatattttt 740
Query: 541 aaa 543
|||
Sbjct: 741 aaa 743
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space: 497289
Effective search space used: 497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
