Query= MSMg01no354_i11.b1 MSMg01no354_i11.b1 CHROMAT_FILE:
MSMg01no354_i11.b1 PHD_FILE: MSMg01no354_i11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:42 2005
(249 letters)
>mm_chr7_103109919_103110572
Length = 654
Score = 418 bits (216), Expect = e-121
Identities = 243/254 (95%), Gaps = 5/254 (1%)
Strand = Plus / Plus
Query: 1 cagatgtaaaa--aaaaaaaaacgtctagtacctctattccaagagctagggaggctccc 58
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 201 cagatgtaaaaagaaaaaaaaaagtctagtacctctattccaagagctagggaggctcgc 260
Query: 59 tagccagcccgtctagtgaactcagcaagctgcaggctcagtgtgagactatgtctttaa 118
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 tagccagcccgtctagtgaactcagcaagctgcaggctcagtgtgagactatatctttaa 320
Query: 119 aaataagatcagcgagcacagaagaagaaatgcagtgtcaac---ctctagcctccccat 175
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 aaataagatcagcgagcacagaagaagaaatgcagtgtcaacaacctctagcctccccat 380
Query: 176 gcacacatgtgtaacatgaacctaagcatgtgtgtacacacacaaatgaagcaacagaat 235
|||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 381 gcacacatctgtaacatgaacctaaacatgagtgtacacacacaaatgaagcaacagaat 440
Query: 236 agttacaagtcttg 249
||||||||||||||
Sbjct: 441 agttacaagtcttg 454
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 654
Length adjustment: 9
Effective length of query: 240
Effective length of database: 645
Effective search space: 154800
Effective search space used: 154800
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no354_i11.g1 MSMg01no354_i11.g1 CHROMAT_FILE:
MSMg01no354_i11.g1 PHD_FILE: MSMg01no354_i11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:42 2005
(304 letters)
>mm_chr7_103225798_103226502
Length = 705
Score = 574 bits (297), Expect = e-168
Identities = 303/305 (99%), Gaps = 1/305 (0%)
Strand = Plus / Minus
Query: 1 ggcacactgggacaagttgggtaaactgggactctccagggcgaactgtcctatgatcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 ggcacactgggacaagttgggtaaactgggactctccagggcgaactgtcctatgatcac 510
Query: 61 tctaattataaaccacccctacctccttcctctcagtttgagtcaaactaaaataaatct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tctaattataaaccacccctacctccttcctctcagtttgagtcaaactaaaataaatct 450
Query: 121 cttcttgacattttacttctctcagttataggaactgtgaacaaataatgtggtgttgag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 cttcttgacattttacttctctcagttataggaactgtgaacaaataatgtggtgttgag 390
Query: 181 gaattttttcttt-actaacaactggaaagaaatccatattatccaatgggtggataaga 239
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gaatttttttttttactaacaactggaaagaaatccatattatccaatgggtggataaga 330
Query: 240 gattgcattttcttatgttcttttaggatggatggggatactccttgggcatttttattg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gattgcattttcttatgttcttttaggatggatggggatactccttgggcatttttattg 270
Query: 300 cctcc 304
|||||
Sbjct: 269 cctcc 265
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 705
Length adjustment: 9
Effective length of query: 295
Effective length of database: 696
Effective search space: 205320
Effective search space used: 205320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
