BAC Information

Click to search

BAC

Clone NameMSMg01-354J09
Chromosome7 (Build37)
Map Location 3,583,640 - 3,584,156
singlet/doubletsinglet
Overlap genePrpf31
Upstream geneLOC100041028, LOC627003, EG664817, Speer9-ps1, AU018091, LOC100041503, Nlrp12, GA_x5J8B7W3939-136239-135295, LOC384710, Myadm, Prkcc, Cacng7, LOC672553, Cacng8, Cacng6, LOC100041095, 9930022N03Rik, LOC100041109, Oscar, Ndufa3, Tfpt
Downstream geneCnot3, Leng1, Tmc4, Leng4, Tsen34, Rps9, Lilrb3, Pira1, LOC100041137, LOC100041146, Pira2, LOC675749, LOC100038908, LOC100038909, Pira11, Pira3, LOC100041186, LOC664841, Lair1, Ttyh1, Leng8, Leng9, Cdc42ep5, LOC384521, EG232801, Ncr1, Gp6, LOC100041851, Atp6v0c-ps1, Rdh13, Eps8l1, Ppp1r12c, Tnnt1, Tnni3, 6030429G01Rik, Syt5, Ptprh, LOC669557, Tmem86b, Saps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-354J09.T7 (MSMg01no354_j09.b1)MSMg01-354J09.TJ (MSMg01no354_j09.g1)
ACCAG465179AG465180
length739753
length of high quality
(start - end)		456 (49 - 504)517 (78 - 594)
definitionCHROMAT_FILE: MSMg01no354_j09.b1 PHD_FILE: MSMg01no354_j09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:46 2005CHROMAT_FILE: MSMg01no354_j09.g1 PHD_FILE: MSMg01no354_j09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCACGTGTTCCTTGACTTTGGTTGGTGACCAGAAAGAAGTGAG
GTTGAAGACACAGGGTGTTGGGCTGTGGATATAGTCCTTGCAAAGGTCCT
GAGGTGGCGTGAATCTGTGTTTGGCCAACAGTGGGAGACCAGTGTGGCTG
GGACACAATGAGAGGGGAGAGATGTATGGTCGAGGAGATAATAGACACTT
GATCCCACAGGTTCACATATATGGCATAGAAGATTCAGCTTTTGCTTGGA
GATGGGAGTCCCTGAAGGTTCCGGAGCAGAGAAACCCTGTGAGCTAGCTT
AAGTTCTACCAGGATGGCTCCTGCTGCTGNGCTCAGAAATGGCTACGGGG
AGGGTGGAAAGGGAGAATGTGGGAGCCAGTGGTTTGAATGCATAGTATAT
TCCAAAGTTCCCCGTGGGAAGGCACTGCTGATGGAGCAATTATGGCATCT
GATAGGNATAGCAGGGTGAGGGGTGTCTCGTATGTGGTGCTTCTGAACCT
CCGCCCTGCTGACATTTTGGGACTGAGAATTCTGTGTGGCGACAACTNGA
CTGAACATTGTAAGANTTTGATCTGCTCCTCTATTCTCTGTCTATTTNNT
TTCTTNTTTACTTTTTTGTATTCCNTAATGCTNATTGCNTTCTNACCTTA
TTNNCATCTCTCCTATTATTCCCATTTTTGTTTATTTAC

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACTGAGGCTTATATTCCTCTCCA
GGAGCCTTACTCCTGCTTCTCATCTTTCTCCTGCAGTCTATCCTCTGGGT
CAATCTGGTCTTGACCTCATCTTGCTCCAAAATTAAACCTTCCTATAGCT
TCCCAAAGCCTTGAGGCTAGCGAGCAAGATCCTCAGACTGGCACTCAAGG
TCTCACATACAGATGGAGGTCCACGTTCCCCACACCTGCAACCTTGCTGC
ACACAGCACAGGAGTCCCTTCAGTGAGATCCGGTGACTCGTTGGCTCTAC
AGCATTATCCTTTCTGCTTTTCTGCTCCATCCTCCCAGCCGCCACCGGGC
ACTCAAGGCTATTTCACTCCTCCTGCCTTCACAGGTACTGTTCCATCTCC
CTGGAACATTCCTTAAGTCTGTTTCTAGAAACCACACTTTATGCATAGAC
AATTAAATTGGTATTGAGTAATGTGGCCTCACATGTCCCTTTAGGTCATT
AAAACTCTGAGGGCATTAAACAACCCCCCACCTCCACCCCAGAAGGGTGA
CAGTCTGCATGAATTGGGCCACCTCTGCTAGACAGGCTTTGTGTCCACTT
CCCCCACTAGTTAGACACCTGACATGAGCAGACTGATTCATCAACTTGAC
ATCTAGCAGTCACGTTCTGGGACTTTCTTTGGGTTTAGGAAAAAGAAATT
CTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no354_j09.g1 MSMg01no354_j09.g1 CHROMAT_FILE:
MSMg01no354_j09.g1 PHD_FILE: MSMg01no354_j09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:47 2005
         (517 letters)



>mm_chr7_3583440_3584356
          Length = 917

 Score =  969 bits (501), Expect = 0.0
 Identities = 513/517 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgaggcttatattcctctccaggagccttactcctgcttctcatctttctcctgcagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 actgaggcttatattcctctccaggagccttactcctgcttctcatctttctcctgcagt 658

                                                                       
Query: 61  ctatcctctgggtcaatctggtcttgacctcatcttgctccaaaattaaaccttcctata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 ctatcctctgggtcaatctggtcttgacctcatcttgctccaaaattaaaccttcctata 598

                                                                       
Query: 121 gcttcccaaagccttgaggctagcgagcaagatcctcagactggcactcaaggtctcaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 597 gcttcccaaagccttgaggctagcgagcaagatcctcagactggcactcaaggtctccca 538

                                                                       
Query: 181 tacagatggaggtccacgttccccacacctgcaaccttgctgcacacagcacaggagtcc 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 537 tacagatggaggtccacgttccccacacctgcaaccttggtgcacacagcacaggagtcc 478

                                                                       
Query: 241 cttcagtgagatccggtgactcgttggctctacagcattatcctttctgcttttctgctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 cttcagtgagatccggtgactcgttggctctacagcattatcctttctgcttttctgctc 418

                                                                       
Query: 301 catcctcccagccgccaccgggcactcaaggctatttcactcctcctgccttcacaggta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 catcctcccagccgccaccgggcactcaaggctatttcactcctcctgccttcacaggta 358

                                                                       
Query: 361 ctgttccatctccctggaacattccttaagtctgtttctagaaaccacactttatgcata 420
           ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 ctgctccatctccctgggacattccttaagtctgtttctagaaaccacactttatgcata 298

                                                                       
Query: 421 gacaattaaattggtattgagtaatgtggcctcacatgtccctttaggtcattaaaactc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 gacaattaaattggtattgagtaatgtggcctcacatgtccctttaggtcattaaaactc 238

                                                
Query: 481 tgagggcattaaacaaccccccacctccaccccagaa 517
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 tgagggcattaaacaaccccccacctccaccccagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space:   459849
Effective search space used:   459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |